Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq21718 125 5e-24 seq16708 120 2e-22 seq21758 87.8 1e-12 seq36416 84.2 1e-11 >seq21718 Length=958615 Score = 125 bits (138), Expect = 5e-24 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| |||||||| || ||||| || || | | Sbjct 51270 ATGCAGATATTCGTGAAAACCCTGACGGGTAAAACGATTACCCTCGAGGTAGAGGCTTCC 51211 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | ||| |||| | || |||||||| || | || || ||||| Sbjct 51210 GACACTATCGAGAATGTGAAAGCAAAGA-TTCAAGACAAAGAGGGAATCCCACCCGATCA 51152 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||| || || ||| |||| || | |||||| | |||||| || Sbjct 51151 ACAGCGTTTGATCTTTGCTGGAAAGCAATTGGAGGATGGACGCACCCTTTCCGATTATAA 51092 Query 23790 CATACAAAAAG 23800 ||| || |||| Sbjct 51091 CATTCAGAAAG 51081 >seq16708 Length=1145218 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || ||||| || ||||| ||||| || ||||| || || | Sbjct 654270 AATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCCTC 654211 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | ||||| ||||| || || | || || |||| Sbjct 654210 TGACACGATCGAGAATGTGAAAGC-CAAAATCCAGGACAAGGAGGGAATTCCTCCTGATC 654152 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||||| || || || ||||| || ||||| || | ||| ||||| || |||| Sbjct 654151 AGCAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGATGGACGTACTTTGTCGGACTACA 654092 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || || ||||| || | ||||| || | || | || |||||| Sbjct 654091 ACATTCAGAAGGAGTCTACTCTTCATTTGGTCCTGAGACTTCGTGGAGGA 654042 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || ||||| || ||||| ||||| || ||||| || || | Sbjct 654726 AATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCCTC 654667 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | |||| | ||||| || || | || || |||| Sbjct 654666 TGACACGATCGAGAATGTGAAAGCCAAAA-TCCAGGACAAGGAGGGAATTCCTCCTGATC 654608 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||||| || || || ||||| || | || || | ||| ||| || ||||||| Sbjct 654607 AGCAGCGTTTGATCTTCGCTGGCAAGCAGTTAGAGGATGGACGAACTCTATCTGATTACA 654548 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| ||||| |||||||| | ||| | || | || | || |||||| Sbjct 654547 ACATCCAAAAGGAGTCCACGCTTCATCTGGTCCTGAGACTTCGTGGAGGA 654498 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || ||||| || ||||| ||||| | ||||| || || | Sbjct 654042 AATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACCATCACCTTGGAAGTCGAAGCCTC 653983 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | |||| | ||||| || || | || || |||| Sbjct 653982 TGACACGATCGAGAATGTGAAAGCCAAAA-TCCAGGACAAGGAGGGAATTCCTCCTGATC 653924 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||||| || || || ||||| || | || || | ||| ||| || ||||||| Sbjct 653923 AGCAGCGTTTGATCTTCGCTGGCAAGCAGTTAGAGGATGGACGAACTCTATCTGATTACA 653864 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| ||||| |||||||| | ||| | || | || | |||||||| Sbjct 653863 ACATCCAAAAGGAGTCCACGCTTCATCTGGTCCTGAGACTTCGAGGAGG 653815 Score = 114 bits (126), Expect = 9e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || ||||| | || || || || ||||| | ||||| || | | Sbjct 1010788 AATGCAGATTTTTGTGAAAACGTTGACTGGGAAGACTATCACATTGGAAGTCGAGGCTTC 1010729 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | || | |||||| |||||||| || |||| || |||| Sbjct 1010728 TGATACGATTGAGAATGTCAAGGC-CAAAATTCAGGACAAAGAGGGAATACCTCCGGATC 1010670 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| || ||||| |||||||| || || ||||| || | |||||| | ||||||| Sbjct 1010669 AACAACGATTAATCTTTGCCGGAAAGCAGCTGGAGGATGGACGCACACTCTCTGATTACA 1010610 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | ||||| || || ||||| | ||| | ||| || | ||| |||| ||| Sbjct 1010609 ATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGTGGA 1010560 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || ||||| || ||||| ||||| || ||||| || | | Sbjct 654498 AATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACTATCACCCTGGAAGTCGAAGCTTC 654439 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | ||| ||||| || || || || | || || ||||| Sbjct 654438 AGATACGATCGAAAACGTGAAAGCCAAAATCCAGGATAAGGAGGGAATTCCTCCTGATCA 654379 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || || ||||| ||||| || || | ||| ||| || |||||||| Sbjct 654378 GCAGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGAACTCTATCTGATTACAA 654319 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || ||||| || | ||||| || | || | || |||||| Sbjct 654318 CATTCAGAAGGAGTCTACTCTTCATTTGGTCCTGAGACTTCGTGGAGGA 654270 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || ||||| || ||||| ||||| || ||||| || | | Sbjct 654954 AATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACTATCACCCTGGAAGTCGAAGCTTC 654895 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | ||| ||||| || || || || | || || ||||| Sbjct 654894 AGATACGATCGAAAACGTGAAAGCCAAAATCCAGGATAAGGAGGGAATTCCTCCTGATCA 654835 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || || ||||| ||||| || || | ||| ||| || |||||||| Sbjct 654834 GCAGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGAACTCTATCTGATTACAA 654775 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || ||||| || || | ||||| || | || | || |||||| Sbjct 654774 CATTCAGAAAGAATCTACTCTTCATTTGGTCCTGAGACTTCGTGGAGGA 654726 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || | || ||||| ||||| || ||||| ||||| | | Sbjct 1011244 AATGCAGATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTCGAGGTTGAGGCTTC 1011185 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| | | || |||||| ||||||||||| | || || || || Sbjct 1011184 CGATACGATTGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCA 1011125 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || || || || || || |||||||| ||||| | |||||| | |||||||| Sbjct 1011124 ACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAA 1011065 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| || || ||||| | ||| | ||| || | ||| |||| ||| Sbjct 1011064 TATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGCGGA 1011016 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || ||||| ||||| || ||||| || | | Sbjct 655181 ATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCTTCA 655122 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| ||||| || || ||||| | || || ||||| Sbjct 655121 GACACGATCGAAAACGTGAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 655062 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || || ||||| ||||| || || | ||| ||| | ||||||||| Sbjct 655061 CAGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGTACTCTCTCTGATTACAAC 655002 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| |||||||| | ||| | || | || | || |||||| Sbjct 655001 ATCCAAAAGGAGTCCACGCTTCATCTGGTCCTGAGACTTCGTGGAGGA 654954 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || | || || |||||||| || ||||| ||||| | | Sbjct 1010332 AATGCAGATTTTTGTAAAGACGTTGACAGGCAAAACGATAACCCTCGAGGTTGAGGCTTC 1010273 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || | |||| || ||||||||||| | || || || | Sbjct 1010272 CGACACGATCGAGAATGTCAAGGCCAAAA-TTCAGGACAAAGAAGGAATTCCTCCGGACC 1010214 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| || || || || || || |||||||| ||||| | | | || | |||||| | Sbjct 1010213 AACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGAAGAACGCTTTCCGATTATA 1010154 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || |||||||| || | ||| | ||| || | || |||| ||| Sbjct 1010153 ACATCCAGAAAGAGTCGACCCTTCATCTGGTTCTACGACTGAGAGGCGGA 1010104 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || | || || || ||||| || ||||| ||||| | | Sbjct 1011016 AATGCAGATTTTTGTCAAGACGTTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1010957 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | || || ||| ||||||||||| | || || || || Sbjct 1010956 CGATACGATTGAAAACGTCAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCGGACCA 1010897 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || | || || || || |||||||| ||||| | |||||| | |||||||| Sbjct 1010896 ACAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAA 1010837 Query 23790 CATACAAAAAGAGTCCAC 23807 ||||||||||| ||||| Sbjct 1010836 TATACAAAAAGAATCCAC 1010819 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || ||||| || ||||| ||||| | | Sbjct 1011471 ATGCAGATCTTCGTCAAGACGTTAACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTCC 1011412 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || |||||| ||||||||||| | || || || ||| Sbjct 1011411 GATACGATTGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCAA 1011352 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || || || |||||||| ||||| | |||||| | |||||||| Sbjct 1011351 CAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAAT 1011292 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| || || ||||| | ||| | ||| || | || |||| ||| Sbjct 1011291 ATACAGAAGGAATCCACTCTTCATCTGGTTCTACGACTGAGAGGCGGA 1011244 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || | || || || ||||| || ||||| ||||| | | Sbjct 1010560 AATGCAGATTTTTGTCAAGACATTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1010501 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | || ||| | || | || ||| |||||||| || |||| || || | Sbjct 1010500 CGATACGATCGAGAATGTCAAGGC-CAAGATTCAGGACAAAGAGGGAATACCTCCGGACC 1010442 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| || | || || || || |||||||| ||||| | ||||| | ||||||| Sbjct 1010441 AACAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGGCGCACACTCTCTGATTACA 1010382 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | ||||| || || ||||| | ||| | ||| || | || |||| ||| Sbjct 1010381 ATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGACTGAGAGGCGGA 1010332 >seq21758 Length=261 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || ||||| | || || || || ||||| | ||||| || | | Sbjct 98 AATGCAGATTTTTGTGAAAACGTTGACTGGGAAGACTATCACATTGGAAGTCGAGGCTTC 157 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | || | |||||| |||||||| || |||| || |||| Sbjct 158 TGATACGATTGAGAATGTCAAGGC-CAAAATTCAGGACAAAGAGGGAATACCTCCGGATC 216 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA 23773 |||| || ||||| |||||||| || || ||||| || | ||||| Sbjct 217 AACAACGATTAATCTTTGCCGGAAAGCAGCTGGAGGATGGACGCA 261 >seq36416 Length=241146 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || || |||||||| | | || ||||||||||||||| |||| || | | ||| | Sbjct 80536 CCACCCGATCAACAAAGACTGATTTTTGCCGGCAAACAATTGGAGGATGGGAGAACTCTG 80595 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| ||||| ||||| |||||||| |||||||| || ||| | ||| |||| || Sbjct 80596 TCCGATTATAACATCCAAAAGGAGTCCACGTTACATTTGGTGTTACGCTTGAGAGGCGG 80654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337801285528544