Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq48246 100 2e-16
>seq48246
Length=3565318
Score = 100 bits (110), Expect = 2e-16
Identities = 84/103 (82%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094
|||||| | ||| |||||||| |||||||| || |||||||| |||||||| |||||
Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567
Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTT 5137
|||||| ||||| ||||||| |||| || |||||||||||
Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTT 2532610
Score = 95.1 bits (104), Expect = 1e-14
Identities = 141/196 (72%), Gaps = 18/196 (9%)
Strand=Plus/Plus
Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629
|||||||||| ||| ||||||||| ||||| ||||||||||| | ||||| ||| |
Sbjct 2531897 CTTCGTCTCTAGAAATAAGTTCGTTACTGAACGTCAATCCGGGCATAAGACCTCGCTTCT 2531956
Query 4630 TAAGCCAAAATATAGCGGCAAA--TGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687
| | ||| || ||||| ||||| || | | | ||||| ||||| || || ||||||||
Sbjct 2531957 TCAACCAGAAAATAGCAGCAAAACTGCCGCTG--AAGAAAATGCCCTCGACCGCGGCAAA 2532014
Query 4688 CGCTACTA----ATCGGGACCCGAACGAGCTGGC---TTTGTCTTTAATCCATTTTAATG 4740
|| |||| ||||| ||| | |||| || | || ||||| |||||||
Sbjct 2532015 TGCGACTACGCGCTCGGG----GAAAG---TGGCACTTTCATGGTTTATCCAATTTAATG 2532067
Query 4741 CCCAGTTAGCTTTTTT 4756
||||||| || || ||
Sbjct 2532068 CCCAGTTGGCCTTCTT 2532083
Score = 87.8 bits (96), Expect = 2e-12
Identities = 126/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877
|| || ||||| |||| || | |||||||| || || | || || || || | |||
Sbjct 2532214 ATGTATGTGTCAATTAATAAGGAGTACATTTCTGAGTGCACGTTCTCCATCGCTACTTGA 2532273
Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAG 4937
|| || || || || | || ||||| ||||||||||| | | ||||| |||||| |
Sbjct 2532274 AAGCCATAGAAACAGCGTGCCTCTGTCACTTGAACTTCTTGGCTAAATCGTTCTACGAGA 2532333
Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGT 4995
|| || || || |||||||| || || || || || || || || ||||||||||
Sbjct 2532334 TTCTCATTAACGATACCGTCGGATGCCGCGAAGAATGCTAATACGTGCGATATAAAGT 2532391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426786410399144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |