Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq48246 100 2e-16 >seq48246 Length=3565318 Score = 100 bits (110), Expect = 2e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 |||||| | ||| |||||||| |||||||| || |||||||| |||||||| ||||| Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567 Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTT 5137 |||||| ||||| ||||||| |||| || ||||||||||| Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTT 2532610 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 18/196 (9%) Strand=Plus/Plus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||||||||| ||| ||||||||| ||||| ||||||||||| | ||||| ||| | Sbjct 2531897 CTTCGTCTCTAGAAATAAGTTCGTTACTGAACGTCAATCCGGGCATAAGACCTCGCTTCT 2531956 Query 4630 TAAGCCAAAATATAGCGGCAAA--TGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687 | | ||| || ||||| ||||| || | | | ||||| ||||| || || |||||||| Sbjct 2531957 TCAACCAGAAAATAGCAGCAAAACTGCCGCTG--AAGAAAATGCCCTCGACCGCGGCAAA 2532014 Query 4688 CGCTACTA----ATCGGGACCCGAACGAGCTGGC---TTTGTCTTTAATCCATTTTAATG 4740 || |||| ||||| ||| | |||| || | || ||||| ||||||| Sbjct 2532015 TGCGACTACGCGCTCGGG----GAAAG---TGGCACTTTCATGGTTTATCCAATTTAATG 2532067 Query 4741 CCCAGTTAGCTTTTTT 4756 ||||||| || || || Sbjct 2532068 CCCAGTTGGCCTTCTT 2532083 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877 || || ||||| |||| || | |||||||| || || | || || || || | ||| Sbjct 2532214 ATGTATGTGTCAATTAATAAGGAGTACATTTCTGAGTGCACGTTCTCCATCGCTACTTGA 2532273 Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAG 4937 || || || || || | || ||||| ||||||||||| | | ||||| |||||| | Sbjct 2532274 AAGCCATAGAAACAGCGTGCCTCTGTCACTTGAACTTCTTGGCTAAATCGTTCTACGAGA 2532333 Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGT 4995 || || || || |||||||| || || || || || || || || |||||||||| Sbjct 2532334 TTCTCATTAACGATACCGTCGGATGCCGCGAAGAATGCTAATACGTGCGATATAAAGT 2532391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426786410399144