Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq50200 114 2e-20 >seq50200 Length=540 Score = 114 bits (126), Expect = 2e-20 Identities = 216/318 (68%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 203293 TCGTGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATCGCC 203352 || |||||| | ||||||||| |||| | ||| | ||| |||||||||| |||||| Sbjct 476 TCCTGTCAGCTCTATCAGCGCTCATGCGATATTTTCCTCGGCCTGCCGTTTAATATCGCC 417 Query 203353 TCGTATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCAACATGGTGGCCGAGGAGTTC 203412 ||||| || ||| | ||| | || |||||| | | || || | || ||| Sbjct 416 AGCTATGCCTTGCTGGTACATATGCTGGCGCAGCAGTGCGATTTGCAGGTCTGTGATTTC 357 Query 203413 GTCTGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCTGCAG 203472 |||||||| || || ||||| ||||| || |||||| || ||||||| |||||| Sbjct 356 GTCTGGACCGGAGGCGATACCCATCTCTACAGTAACCATTTGCAGCAGGCGGACCTGCAG 297 Query 203473 TTAACTCGTGACCCGCACCCATTACCGCGTCTGAAATTCAAACGTAAGCCCGAGTCTATC 203532 |||| ||||| || | || | |||| ||| | || || || | | | | Sbjct 296 CTAACCCGTGATCCTCTGCCGCTGCCGCAGCTGCTGATTAAGCGCCGTCCGGCGACATTG 237 Query 203533 TTCGACTACCAGTTCGAAGACTTTGAAATCGAAGGCTACGTTTCCCACGACGCCATCAAA 203592 ||||||||| || || || ||||| | ||||||| | ||||| || |||||| Sbjct 236 CTCGACTACCGTTTTGAGGATTTTGAGCTGACGGGCTACGATCCCCACCCAGCAATCAAA 177 Query 203593 GCACCGGTTGCCATTTAA 203610 |||||||| || ||||| Sbjct 176 GCACCGGTGGCAGTTTAA 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787821702928000