Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq10733 152 7e-32 seq2660 93.3 6e-14 >seq10733 Length=171697 Score = 152 bits (168), Expect = 7e-32 Identities = 215/302 (71%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 77037 GAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTT 77096 |||||| || | ||| ||| ||| || ||||| || | ||| | | ||| || ||| Sbjct 125618 GAACCATTATTCGCTATTATTTCATTTTTCATATCTTCGTCCCAAAGATCCCTTTCAGTT 125677 Query 77097 AAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTG 77156 | | | | | | |||||||||||| | |||||| ||||| ||||| ||||| | || Sbjct 125678 AGATCCCGCAATAAATGAGGATTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTA 125737 Query 77157 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAA 77216 |||||||| ||||||||||||| | ||||||||| ||||| | || || || ||||| Sbjct 125738 TAAATATTGTTGGTATATGGTTCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAGAC 125797 Query 77217 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 77276 || ||||||||||| || | | ||| ||| || | || ||| | ||| || ||| Sbjct 125798 GCTGTTGGCATAGGCGCAATTAGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCT 125857 Query 77277 TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGA 77336 || | | ||||||||| | ||| | ||| ||||| ||| | ||||||||| | | Sbjct 125858 TTCAATGCTGCCCAATCCCATAAATCCGTAGGCGTAACATTCCACATATCGTATTGCAAA 125917 Query 77337 AT 77338 || Sbjct 125918 AT 125919 Score = 116 bits (128), Expect = 5e-21 Identities = 127/166 (77%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 77912 AGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGG 77971 |||||| ||| ||||||||| || ||||||||||||| || ||||| |||||| ||| Sbjct 126396 AGTATACAGCGTTTCAAATTCTTCACCCCAAACATCATGTAACCCAGGAGATTCATGTGG 126455 Query 77972 GCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCA 78031 ||||| || ||| |||||| ||| ||||||||||||||| |||||||| | ||| Sbjct 126456 ACACATTAAACTCCATACACCATTTTCAAAAACTCGTTTCATAAATAGATCAGGCACCCA 126515 Query 78032 TAGAGCAATA-AATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT 78076 || | | || |||| |||| | |||||||| || || ||||| Sbjct 126516 TA-ACCCGTAGAATAACTCTCTTGCCCTATGTTCCTCCTTGCCTGT 126560 Score = 102 bits (112), Expect = 1e-16 Identities = 120/161 (75%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 78065 TTCATTT-CCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTT 78123 || |||| || ||||||||||||||||| | || || | |||||| | ||||||||||| Sbjct 126629 TTAATTTACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTT 126688 Query 78124 CTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGG 78183 ||| ||| | || | |||| |||| ||||| ||||| ||||| | ||||| || | Sbjct 126689 CTAAATACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTG 126748 Query 78184 TGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 | || ||||| |||| | ||| |||| | ||| || ||| Sbjct 126749 TATTGTTATATACTCGAATCATAGGAACCAAACCATTCGAT 126789 Score = 98.7 bits (108), Expect = 1e-15 Identities = 183/267 (69%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 ||||||||||| || || | ||| | |||| || | ||| || |||||||| ||||| Sbjct 127014 CTAGACATTTGCTGTTGCATAGTGCATGCAGAGAAAAGTGTTGGGGATGCATGTGTAAAG 127073 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 | ||| || | | || || ||||| || || || ||||| | || || Sbjct 127074 TAACGTTCTGATAAAAAGTTATAAGTTTCTATGACTTTATCAATGTCTTCACGGTGGATG 127133 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTC 78557 | || || || | ||| |||||||| ||||| ||||| || || |||||||| Sbjct 127134 GCAACTGCAACTCTCATTAACATATGTTGAGGCCTTTCGACAACTTTTCCCTTTATTTTT 127193 Query 78558 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTCT 78615 || | || | | || | |||||| ||||||||||| || || ||||| ||||| | Sbjct 127194 AATAGATAACTTCTCTCAAGAGTTTTGAAACCAAAATAATTATAACTGAAA--TCTCTAT 127251 Query 78616 CGTAAATAATAACAGAATTTAGTTTAT 78642 | ||||| || ||||||||| ||||| Sbjct 127252 CATAAATTATTGCAGAATTTAATTTAT 127278 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 78753 TTTTTTGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCA 78812 ||||||||||| || || |||||||| || || ||||||||||||| | ||||||||| Sbjct 127483 TTTTTTGTTTCTTTATGAAGATTAGAGACTGCAATTCTTGCAGCTAATACAGCATAATCT 127542 Query 78813 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTT 78872 || || | |||||| ||| ||||| |||| || || | | ||||||| || | || Sbjct 127543 GGGTGCTTTGTAGTCATAGTAGCTGCAGTTTCAGCTGCAAGATTATCTAATTCAACTGTG 127602 Query 78873 GTGACCCCATTATATAGTCCTTGAATAAC 78901 || || || ||||| || | ||| || Sbjct 127603 GTAACACCCGAATATAAACCATTAATGAC 127631 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/176 (73%), Gaps = 8/176 (5%) Strand=Plus/Plus Query 77664 ACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCA 77723 |||||||| || | ||| || || || | ||| || || || || |||| | | | | Sbjct 126079 ACAAACATATTGACAGCAATTGAAGCCAAATTGCATACGGCAACTTCATCCGGACTAGAA 126138 Query 77724 TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTG 77783 ||||||| || || ||||| | |||||| ||||| || || || | |||||| || || Sbjct 126139 TATTGTACAATTTCCGTACACAAATTACTGCATTTAATTGTTCCTATATTTTGATGATT- 126197 Query 77784 CTCTTTTTA---TTGCA-TGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAA 77835 | |||| ||||| ||| ||||||||||| ||||| ||||| || ||||||| Sbjct 126198 --CGATTTACGGTTGCAATGA-TCCTTATAAAGCATAAAAGGAGTTCCTGTTTCAA 126250 >seq2660 Length=453 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 78753 TTTTTTGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCA 78812 ||||||||||| || || |||||||| || || ||||||||||||| | ||||||||| Sbjct 39 TTTTTTGTTTCTTTATGAAGATTAGAGACTGCAATTCTTGCAGCTAATACAGCATAATCT 98 Query 78813 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTT 78872 || || | |||||| ||| ||||| |||| || || | | ||||||| || | || Sbjct 99 GGGTGCTTTGTAGTCATAGTAGCTGCAGTTTCAGCTGCAAGATTATCTAATTCAACTGTG 158 Query 78873 GTGACCCCATTATATAGTCCTTGAATAAC 78901 || || || ||||| || | ||| || Sbjct 159 GTAACACCCGAATATAAACCATTAATGAC 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694229699851520