Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq10733 132 7e-26 seq2114 109 8e-19 seq48246 89.7 7e-13 >seq10733 Length=171697 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 |||||||||||| | |||||| ||||| ||||| ||||||| || |||||||| |||| Sbjct 125692 ATGAGGATTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTGGT 125751 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 ||||||||| | ||||||||| ||||| | || || || || || || || |||||||| Sbjct 125752 ATATGGTTCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGG 125811 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 || | | ||| ||| || | || ||| | ||| || ||||| | | ||| Sbjct 125812 CGCAATTAGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCCCA 125871 Query 75886 ATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 |||||| | ||| | || ||||| ||| | ||||||||| | ||| Sbjct 125872 ATCCCATAAATCCGTAGGCGTAACATTCCACATATCGTATTGCAAAAT 125919 Score = 111 bits (122), Expect = 2e-19 Identities = 217/317 (68%), Gaps = 3/317 (1%) Strand=Plus/Plus Query 76660 TTCATTT-CCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTT 76718 || |||| || ||||||||||||||||||| ||| || | |||||| | ||||||||||| Sbjct 126629 TTAATTTACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTT 126688 Query 76719 CTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAG 76778 ||| ||| | || | | || |||| ||||| ||||| ||||| | ||||| || | Sbjct 126689 CTAAATACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTG 126748 Query 76779 TGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAA 76838 | || ||||| |||| | ||| |||| | || || ||| |||| || | || | Sbjct 126749 TATTGTTATATACTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGCTAGCTA 126808 Query 76839 TATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAG 76898 | | || | || | ||| | | | || || || || || || |||| Sbjct 126809 TTGGTGTACCCCTAGCTCTTATACAATGTACATTGAGTCCAATACCACCAGCTGATTTAC 126868 Query 76899 AGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCA-TG 76957 || || ||||| | ||| ||||| ||||| || || | |||||||| || ||| || Sbjct 126869 TAATGAGTGCACATCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTG 126928 Query 76958 TTAAGAAGAAAACAGCT 76974 |||| |||||||| || Sbjct 126929 TTAA-CAGAAAACAACT 126944 Score = 109 bits (120), Expect = 8e-19 Identities = 174/247 (70%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 76259 ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA 76318 ||||||||||| | ||| || || || | ||| || ||||| || |||| | | | | | Sbjct 126079 ACAAACATATTGACAGCAATTGAAGCCAAATTGCATACGGCAACTTCATCCGGACTAGAA 126138 Query 76319 TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTG 76378 ||||||| || ||||| || | |||||| || || || ||||| | |||||| || || Sbjct 126139 TATTGTACAATTTCCGTACACAAATTACTGCATTTAATTGTTCCTATATTTTGATGATTC 126198 Query 76379 CTCTTTTTGTTAC-ATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGA 76437 || ||| | |||| ||||||||||| | ||| |||||||| ||||||| || | Sbjct 126199 GATTTACGGTTGCAATGA-TCCTTATAAAGCATAAAAGGAGTTCCTGTTTCAACTTGGGC 126257 Query 76438 TTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTCT 76497 | | |||| | |||| | | | || |||| ||| |||||||| ||||| | Sbjct 126258 AACAAGTATAGCTGTCCATAAGTCCCTGGCTTGAATTTGGCGTTTGTATCTTTTCTCATT 126317 Query 76498 TTCATAT 76504 ||| ||| Sbjct 126318 TTCGTAT 126324 Score = 105 bits (116), Expect = 1e-17 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 ||||| | | ||||||||| || ||||||||||||| || |||||| |||||| ||| Sbjct 126397 GTATACAGCGTTTCAAATTCTTCACCCCAAACATCATGTAACCCAGGAGATTCATGTGGA 126456 Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627 ||||| || ||| |||||| ||| ||| ||||||||||| |||||||| | |||| Sbjct 126457 CACATTAAACTCCATACACCATTTTCAAAAACTCGTTTCATAAATAGATCAGGCACCCAT 126516 Query 76628 AGAGCAATA-AATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 | | | || |||| |||| | ||| |||| || || ||||| Sbjct 126517 A-ACCCGTAGAATAACTCTCTTGCCCTATGTTCCTCCTTGCCTGT 126560 Score = 86.0 bits (94), Expect = 9e-12 Identities = 179/265 (68%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 ||||||||||| || || | ||| | |||| || | ||| || |||||||| || || Sbjct 127014 CTAGACATTTGCTGTTGCATAGTGCATGCAGAGAAAAGTGTTGGGGATGCATGTGTAAAG 127073 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 | ||| || | | || || ||||| || ||| || || || | || || Sbjct 127074 TAACGTTCTGATAAAAAGTTATAAGTTTCTATGACTTTATCAATGTCTTCACGGTGGATG 127133 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152 | || || || | ||| |||||||| ||||| | ||| ||| || |||||||| Sbjct 127134 GCAACTGCAACTCTCATTAACATATGTTGAGGCCTTTCGACAACTTTTCCCTTTATTTTT 127193 Query 77153 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTTT 77210 || | || | | || | |||||| ||||||||||| || || ||||| ||||| | Sbjct 127194 AATAGATAACTTCTCTCAAGAGTTTTGAAACCAAAATAATTATAACTGAAA--TCTCTAT 127251 Query 77211 CGTAAATAATAACCGAATTTAGTTT 77235 | ||||| || | ||||||| ||| Sbjct 127252 CATAAATTATTGCAGAATTTAATTT 127276 >seq2114 Length=466 Score = 109 bits (120), Expect = 8e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||| |||||||| || || | || |||||||| ||| ||||| || ||||| |||| ||| Sbjct 266 ATAAGTTTCGTACGTGCCTTTCTCTTCAGCTAATTCACAACTAGCTTCTAAAGCACTGTA 325 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||| | ||||| || || | ||||||| | ||| || || ||| ||||| ||||| Sbjct 326 ATACAAAGTTTCAAATATTTGAATATTAAGTTTTTGAGCATCTTCACTCTCAAATGGATA 385 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 | | | || ||||||||||| || || |||| ||||||||| Sbjct 386 TCGCATTAAAAGGAATGCATCTGCCAGACCTTGAATTCCAATACC 430 >seq48246 Length=3565318 Score = 89.7 bits (98), Expect = 7e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 |||| || | ||| |||||||| | |||||||| ||||| ||||||||||||||||| | Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTA 47233 ||| || ||| | | || || ||||| | ||||||||| || || || | | |||| Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTTAGGGTTCTCTTTGAGTA 2532627 Query 47234 TAGGTTC 47240 ||||| Sbjct 2532628 ATGGTTC 2532634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712483754165760