Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq10733 132 7e-26
seq2114 109 8e-19
seq48246 89.7 7e-13
>seq10733
Length=171697
Score = 132 bits (146), Expect = 7e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765
|||||||||||| | |||||| ||||| ||||| ||||||| || |||||||| ||||
Sbjct 125692 ATGAGGATTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTGGT 125751
Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825
||||||||| | ||||||||| ||||| | || || || || || || || ||||||||
Sbjct 125752 ATATGGTTCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGG 125811
Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885
|| | | ||| ||| || | || ||| | ||| || ||||| | | |||
Sbjct 125812 CGCAATTAGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCCCA 125871
Query 75886 ATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933
|||||| | ||| | || ||||| ||| | ||||||||| | |||
Sbjct 125872 ATCCCATAAATCCGTAGGCGTAACATTCCACATATCGTATTGCAAAAT 125919
Score = 111 bits (122), Expect = 2e-19
Identities = 217/317 (68%), Gaps = 3/317 (1%)
Strand=Plus/Plus
Query 76660 TTCATTT-CCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTT 76718
|| |||| || ||||||||||||||||||| ||| || | |||||| | |||||||||||
Sbjct 126629 TTAATTTACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTT 126688
Query 76719 CTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAG 76778
||| ||| | || | | || |||| ||||| ||||| ||||| | ||||| || |
Sbjct 126689 CTAAATACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTG 126748
Query 76779 TGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAA 76838
| || ||||| |||| | ||| |||| | || || ||| |||| || | || |
Sbjct 126749 TATTGTTATATACTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGCTAGCTA 126808
Query 76839 TATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAG 76898
| | || | || | ||| | | | || || || || || || ||||
Sbjct 126809 TTGGTGTACCCCTAGCTCTTATACAATGTACATTGAGTCCAATACCACCAGCTGATTTAC 126868
Query 76899 AGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCA-TG 76957
|| || ||||| | ||| ||||| ||||| || || | |||||||| || ||| ||
Sbjct 126869 TAATGAGTGCACATCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTG 126928
Query 76958 TTAAGAAGAAAACAGCT 76974
|||| |||||||| ||
Sbjct 126929 TTAA-CAGAAAACAACT 126944
Score = 109 bits (120), Expect = 8e-19
Identities = 174/247 (70%), Gaps = 2/247 (1%)
Strand=Plus/Plus
Query 76259 ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA 76318
||||||||||| | ||| || || || | ||| || ||||| || |||| | | | | |
Sbjct 126079 ACAAACATATTGACAGCAATTGAAGCCAAATTGCATACGGCAACTTCATCCGGACTAGAA 126138
Query 76319 TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTG 76378
||||||| || ||||| || | |||||| || || || ||||| | |||||| || ||
Sbjct 126139 TATTGTACAATTTCCGTACACAAATTACTGCATTTAATTGTTCCTATATTTTGATGATTC 126198
Query 76379 CTCTTTTTGTTAC-ATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGA 76437
|| ||| | |||| ||||||||||| | ||| |||||||| ||||||| || |
Sbjct 126199 GATTTACGGTTGCAATGA-TCCTTATAAAGCATAAAAGGAGTTCCTGTTTCAACTTGGGC 126257
Query 76438 TTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTCT 76497
| | |||| | |||| | | | || |||| ||| |||||||| ||||| |
Sbjct 126258 AACAAGTATAGCTGTCCATAAGTCCCTGGCTTGAATTTGGCGTTTGTATCTTTTCTCATT 126317
Query 76498 TTCATAT 76504
||| |||
Sbjct 126318 TTCGTAT 126324
Score = 105 bits (116), Expect = 1e-17
Identities = 124/165 (75%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567
||||| | | ||||||||| || ||||||||||||| || |||||| |||||| |||
Sbjct 126397 GTATACAGCGTTTCAAATTCTTCACCCCAAACATCATGTAACCCAGGAGATTCATGTGGA 126456
Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627
||||| || ||| |||||| ||| ||| ||||||||||| |||||||| | ||||
Sbjct 126457 CACATTAAACTCCATACACCATTTTCAAAAACTCGTTTCATAAATAGATCAGGCACCCAT 126516
Query 76628 AGAGCAATA-AATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671
| | | || |||| |||| | ||| |||| || || |||||
Sbjct 126517 A-ACCCGTAGAATAACTCTCTTGCCCTATGTTCCTCCTTGCCTGT 126560
Score = 86.0 bits (94), Expect = 9e-12
Identities = 179/265 (68%), Gaps = 4/265 (2%)
Strand=Plus/Plus
Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032
||||||||||| || || | ||| | |||| || | ||| || |||||||| || ||
Sbjct 127014 CTAGACATTTGCTGTTGCATAGTGCATGCAGAGAAAAGTGTTGGGGATGCATGTGTAAAG 127073
Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092
| ||| || | | || || ||||| || ||| || || || | || ||
Sbjct 127074 TAACGTTCTGATAAAAAGTTATAAGTTTCTATGACTTTATCAATGTCTTCACGGTGGATG 127133
Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152
| || || || | ||| |||||||| ||||| | ||| ||| || ||||||||
Sbjct 127134 GCAACTGCAACTCTCATTAACATATGTTGAGGCCTTTCGACAACTTTTCCCTTTATTTTT 127193
Query 77153 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTTT 77210
|| | || | | || | |||||| ||||||||||| || || ||||| ||||| |
Sbjct 127194 AATAGATAACTTCTCTCAAGAGTTTTGAAACCAAAATAATTATAACTGAAA--TCTCTAT 127251
Query 77211 CGTAAATAATAACCGAATTTAGTTT 77235
| ||||| || | ||||||| |||
Sbjct 127252 CATAAATTATTGCAGAATTTAATTT 127276
>seq2114
Length=466
Score = 109 bits (120), Expect = 8e-19
Identities = 123/165 (75%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017
||| |||||||| || || | || |||||||| ||| ||||| || ||||| |||| |||
Sbjct 266 ATAAGTTTCGTACGTGCCTTTCTCTTCAGCTAATTCACAACTAGCTTCTAAAGCACTGTA 325
Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077
||| | ||||| || || | ||||||| | ||| || || ||| ||||| |||||
Sbjct 326 ATACAAAGTTTCAAATATTTGAATATTAAGTTTTTGAGCATCTTCACTCTCAAATGGATA 385
Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122
| | | || ||||||||||| || || |||| |||||||||
Sbjct 386 TCGCATTAAAAGGAATGCATCTGCCAGACCTTGAATTCCAATACC 430
>seq48246
Length=3565318
Score = 89.7 bits (98), Expect = 7e-13
Identities = 96/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173
|||| || | ||| |||||||| | |||||||| ||||| ||||||||||||||||| |
Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567
Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTA 47233
||| || ||| | | || || ||||| | ||||||||| || || || | | ||||
Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTTAGGGTTCTCTTTGAGTA 2532627
Query 47234 TAGGTTC 47240
|||||
Sbjct 2532628 ATGGTTC 2532634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712483754165760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |