Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq50200 127 3e-24 >seq50200 Length=540 Score = 127 bits (140), Expect = 3e-24 Identities = 167/226 (74%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 202493 TCTTGTCAGCTCTATCAGCG-TAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATCGC 202551 || ||||||||||||||||| | |||| | || ||||| ||| | |||||||| ||||| Sbjct 476 TCCTGTCAGCTCTATCAGCGCTCATGCG-ATATTTTCCTCGGCCTGCCGTTTAATATCGC 418 Query 202552 GTCTTACGCCTTGCTGGTACACATGTTTGCACAACAG-GCGAACATGGCGGTAGGCGACT 202610 || |||||||||||||| ||| | || || ||| |||| || ||| | || | Sbjct 417 CAGCTATGCCTTGCTGGTACATATGCTGGCGCAGCAGTGCGATT-TGCAGGTCTGTGATT 359 Query 202611 TCGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACCTCC 202670 |||||||||| || || ||||| ||||| ||| |||||| || | || || ||||| | Sbjct 358 TCGTCTGGACCGGAGGCGATACCCATCTCTACAGTAACCATTTGCAGCAGGCGGACCTGC 299 Query 202671 AACTTACCCGTGACCCTAAACCGTTACCGAAGTTGGTTATCAAACG 202716 | || |||||||| ||| ||| | ||| || || | || || || Sbjct 298 AGCTAACCCGTGATCCTCTGCCGCTGCCGCAGCTGCTGATTAAGCG 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787505103177280