Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq50200 89.7 8e-13 seq28646 87.8 3e-12 seq28635 87.8 3e-12 >seq50200 Length=540 Score = 89.7 bits (98), Expect = 8e-13 Identities = 211/314 (67%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 200842 TCCTGTCAGCTGTATCAGCG-TAGCGCTGATATGTTTTTAGGCGTGCCGTTCAACATTGC 200900 ||||||||||| |||||||| | || ||||| || | ||| ||||||| || || || Sbjct 476 TCCTGTCAGCTCTATCAGCGCTCATGC-GATATTTTCCTCGGCCTGCCGTTTAATATCGC 418 Query 200901 ATCATACGCACTACTGATTCACATGGTAGCCCAACAGGTCAATATGACTGTCGGTGATTT 200960 || || | ||| | || ||| | || || ||| | || || ||| ||||||| Sbjct 417 CAGCTATGCCTTGCTGGTACATATGCTGGCGCAGCAGTGCGATTTGCAGGTCTGTGATTT 358 Query 200961 CGTATGGACGGGTGGTGACGTACACA--TCTACAGCAATCACGAAGAGCAGGTTCGTCTG 201018 ||| ||||| || || || ||| || ||||||| || || |||||| ||| Sbjct 357 CGTCTGGACCGGAGGCGA--TACCCATCTCTACAGTAACCATTTGCAGCAGGCGGACCTG 300 Query 201019 CAACTGTCTCGTGATCCGCGTCCTTTACCGAAGTTGAAAATTCTTCGTAAGCCGGACTCT 201078 || || | |||||||| | || | ||| || || ||| || |||| | Sbjct 299 CAGCTAACCCGTGATCCTCTGCCGCTGCCGCAGCTGCTGATTAAGCGCCGTCCGGCGACA 240 Query 201079 ATCTTCGATTACAAGTTCGAAGACTTTGAGCTTACTGGTTACGAACCGCATCCTGCGATA 201138 | |||| ||| || || || |||||||| || || ||||| || || || || || Sbjct 239 TTGCTCGACTACCGTTTTGAGGATTTTGAGCTGACGGGCTACGATCCCCACCCAGCAATC 180 Query 201139 AAAGCACCGGTGGC 201152 |||||||||||||| Sbjct 179 AAAGCACCGGTGGC 166 >seq28646 Length=1435 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 3214 CTCGTAGCTCAGTTGGTCAGAGCGCTCGCCTGATAAGCGGGAGGTCAGTGGTTCAAGTCC 3273 || ||||||||| |||| ||||||| | ||||||||| | |||||||||||||||||||| Sbjct 150 CTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCAGTGGTTCAAGTCC 91 Query 3274 ACTCGAGACAACCAATTC 3291 |||| | | |||| ||| Sbjct 90 ACTCAGGCCTACCAGTTC 73 >seq28635 Length=1435 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 3214 CTCGTAGCTCAGTTGGTCAGAGCGCTCGCCTGATAAGCGGGAGGTCAGTGGTTCAAGTCC 3273 || ||||||||| |||| ||||||| | ||||||||| | |||||||||||||||||||| Sbjct 150 CTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCAGTGGTTCAAGTCC 91 Query 3274 ACTCGAGACAACCAATTC 3291 |||| | | |||| ||| Sbjct 90 ACTCAGGCCTACCAGTTC 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 782864838144000