Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_031127.1
Length=240761
Score E
Sequences producing significant alignments: (Bits) Value
seq50200 127 3e-24
>seq50200
Length=540
Score = 127 bits (140), Expect = 3e-24
Identities = 223/322 (69%), Gaps = 2/322 (1%)
Strand=Plus/Minus
Query 196750 TGTCCTGTCAGCTTTACCAGCGCAG-TGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808
||||||||||||| || |||||| ||| || | |||||||| | ||||| || |||
Sbjct 478 TGTCCTGTCAGCTCTATCAGCGCTCATGC-GATATTTTCCTCGGCCTGCCGTTTAATATC 420
Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGAT 196868
|| || || || |||| || ||| |||| |||||| | || || || |||||
Sbjct 419 GCCAGCTATGCCTTGCTGGTACATATGCTGGCGCAGCAGTGCGATTTGCAGGTCTGTGAT 360
Query 196869 TTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTTG 196928
||||||||||| || |||||||||||||| ||| ||||||| || | ||||| ||
Sbjct 359 TTCGTCTGGACCGGAGGCGATACCCATCTCTACAGTAACCATTTGCAGCAGGCGGACCTG 300
Query 196929 CAGCTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACGTAAACCGGATTCC 196988
||||| |||||| || | ||||| |||| | || || || |||| |
Sbjct 299 CAGCTAACCCGTGATCCTCTGCCGCTGCCGCAGCTGCTGATTAAGCGCCGTCCGGCGACA 240
Query 196989 ATTTTCGACTATAAGTTCGAAGATTTTGAAATCGTGGGTTACGAAAGCCACCCACCCATT 197048
| ||||||| || || |||||||| | ||| ||||| ||||||| | ||
Sbjct 239 TTGCTCGACTACCGTTTTGAGGATTTTGAGCTGACGGGCTACGATCCCCACCCAGCAATC 180
Query 197049 AAGGCACCGGTTGCCATCTAAG 197070
|| |||||||| || | ||||
Sbjct 179 AAAGCACCGGTGGCAGTTTAAG 158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 769820288818880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |