Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq50200 127 3e-24 >seq50200 Length=540 Score = 127 bits (140), Expect = 3e-24 Identities = 223/322 (69%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 196750 TGTCCTGTCAGCTTTACCAGCGCAG-TGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 ||||||||||||| || |||||| ||| || | |||||||| | ||||| || ||| Sbjct 478 TGTCCTGTCAGCTCTATCAGCGCTCATGC-GATATTTTCCTCGGCCTGCCGTTTAATATC 420 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGAT 196868 || || || || |||| || ||| |||| |||||| | || || || ||||| Sbjct 419 GCCAGCTATGCCTTGCTGGTACATATGCTGGCGCAGCAGTGCGATTTGCAGGTCTGTGAT 360 Query 196869 TTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTTG 196928 ||||||||||| || |||||||||||||| ||| ||||||| || | ||||| || Sbjct 359 TTCGTCTGGACCGGAGGCGATACCCATCTCTACAGTAACCATTTGCAGCAGGCGGACCTG 300 Query 196929 CAGCTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACGTAAACCGGATTCC 196988 ||||| |||||| || | ||||| |||| | || || || |||| | Sbjct 299 CAGCTAACCCGTGATCCTCTGCCGCTGCCGCAGCTGCTGATTAAGCGCCGTCCGGCGACA 240 Query 196989 ATTTTCGACTATAAGTTCGAAGATTTTGAAATCGTGGGTTACGAAAGCCACCCACCCATT 197048 | ||||||| || || |||||||| | ||| ||||| ||||||| | || Sbjct 239 TTGCTCGACTACCGTTTTGAGGATTTTGAGCTGACGGGCTACGATCCCCACCCAGCAATC 180 Query 197049 AAGGCACCGGTTGCCATCTAAG 197070 || |||||||| || | |||| Sbjct 179 AAAGCACCGGTGGCAGTTTAAG 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769820288818880