Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq16708 143 6e-29 >seq16708 Length=1145218 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| ||||| | ||||||||||||||| || || ||||||||||| | || ||||| Sbjct 654280 AGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGATAGAGTTCGT 654339 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| ||||| || || |||||||| | | |||||| || | | ||||| ||| Sbjct 654340 CCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCC 654399 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || ||||| ||| || | || | | |||||| || ||||| || || Sbjct 654400 TTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGACTTCCAGGGTG 654459 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || ||||||||||| ||||| | ||||||| Sbjct 654460 ATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654498 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| ||||| |||||||| || ||||| ||||||||||||||||| | || ||||| Sbjct 654508 AGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTTCGT 654567 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| |||| || || |||||||| | | |||||| || | | ||||| ||| Sbjct 654568 CCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCC 654627 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || ||||| ||| ||| |||| | |||| || || ||||| || || Sbjct 654628 TTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTG 654687 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || ||||||||||| ||||| | ||||||| Sbjct 654688 ATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654726 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| ||||| | |||||||||||| ||||| || ||||||||||| | || ||||| Sbjct 654736 AGTCTCAGGACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGT 654795 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| ||||| || || |||||||| | | |||||| || | | ||||| ||| Sbjct 654796 CCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCC 654855 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || ||||| ||| || | || | | |||||| || ||||| || || Sbjct 654856 TTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGACTTCCAGGGTG 654915 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || ||||||||||| ||||| | ||||||| Sbjct 654916 ATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654954 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| ||||| |||||||| || ||||| ||||||||||||||||| | | ||| | Sbjct 654964 AGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAGAGAGTACGT 655023 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| ||||| || || |||||||| | | |||||| || | | ||||||||| Sbjct 655024 CCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCTTCC 655083 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || ||||| ||| || | || | |||||||| || ||||| || || Sbjct 655084 TTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTGTCTGAAGCTTCGACTTCCAGGGTG 655143 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||||||||| || |||| |||||| Sbjct 655144 ATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 655181 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| ||||| |||||||| || ||||| ||||||||||||||||| | || ||||| Sbjct 653824 AGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTTCGT 653883 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| |||| || || |||||||| | | |||||| || | | ||||| ||| Sbjct 653884 CCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCC 653943 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || ||||| ||| ||| |||| | |||| || || ||||| | || Sbjct 653944 TTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAAGGTG 654003 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || ||||||||||| ||||| | ||||||| Sbjct 654004 ATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654042 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| ||||| | ||||||||||||||| || || |||||||| || | ||||| | Sbjct 654052 AGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGACAAAGTACGT 654111 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || || || ||||| || | | |||||| || | | ||||| ||| Sbjct 654112 CCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCC 654171 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || ||||| ||| ||| |||| | |||| || || ||||| || || Sbjct 654172 TTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTG 654231 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || ||||||||||| ||||| | ||||||| Sbjct 654232 ATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654270 Score = 125 bits (138), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || |||||||| || ||||| || |||||||| ||||| | | || | Sbjct 1009885 GAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCAGAAAGTGTGCG 1009944 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||||| ||||| || |||||||| | || |||||||||| | |||||| Sbjct 1009945 TCCATCTTCTAACTGCTTT--CCAGCGAAGATCAATCTTTGCTGGTCCGGTGGAATTCCT 1010002 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||||||||| ||| ||| | || | | | || || ||| ||||| | Sbjct 1010003 TCTTTGTCTTGAATTTTAGCTTTCACATTTTCGATGGTATCGGACGCCTCGACTTCCAAT 1010062 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || |||||||| || || | ||||||| Sbjct 1010063 GTGATAGTCTTCCCAGTCAGAGTCTTAACAAAAATCTGCATT 1010104 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||| || || ||||||||||| || || || || || |||||||| | | || Sbjct 1011251 CTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTG 1011310 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || ||| || |||||||| | | || ||||||| | |||||| Sbjct 1011311 CGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCT 1011370 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || |||||||| ||||| |||| | | || ||| ||| || || || Sbjct 1011371 TCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACCTCGAGG 1011430 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || | ||||| ||||||| |||||| Sbjct 1011431 GTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCAT 1011471 Score = 104 bits (114), Expect = 5e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||| || || ||||||||||| || || || || || |||||||| | | || Sbjct 1010339 CTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTG 1010398 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||| || |||||||| || | || ||||||| | ||||| Sbjct 1010399 CGCCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGTATTCCC 1010458 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || ||||| || |||||| |||| | | || ||| ||| || || || Sbjct 1010459 TCTTTGTCCTGAATCTTGGCCTTGACATTCTCGATCGTATCGGAAGCCTCAACCTCGAGG 1010518 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || ||||| || | ||||| || || | ||||||| Sbjct 1010519 GTTATCGTCTTGCCTGTCAATGTCTTGACAAAAATCTGCATT 1010560 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||||||||| || || || || || |||||||| | | || | |||||| Sbjct 1011032 AGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCATCT 1011091 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || |||||||| | | || ||||||| | |||||||| || || Sbjct 1011092 TCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCC 1011151 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||||| |||| | | || ||| ||| || || || || || || Sbjct 1011152 TGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTC 1011211 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | |||||| || || | ||||||| Sbjct 1011212 TTTCCAGTCAAAGTCTTGACAAAAATCTGCATT 1011244 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||||||||| || || || || || |||||||| | | || | ||||| Sbjct 1010576 AGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCATCC 1010635 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| ||||| | | || || |||| | ||||| || || | Sbjct 1010636 TCCAGCTGCTTT--CCGGCAAAGATTAATCGTTGTTGATCCGGAGGTATTCCCTCTTTGT 1010693 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | |||||||| |||||| |||| | | || ||| ||| ||||| | || |||| Sbjct 1010694 CCTGAATTTTGGCCTTGACATTCTCAATCGTATCAGAAGCCTCGACTTCCAATGTGATAG 1010753 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || | || ||||| || | ||||||| Sbjct 1010754 TCTTCCCAGTCAACGTTTTCACAAAAATCTGCATT 1010788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153073236619128