Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq36416 95.1 1e-14 seq16708 86.0 5e-12 >seq36416 Length=241146 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 111213 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111272 |||||||||||| || |||| ||| |||||||||||||| ||| | |||| || |||| Sbjct 80541 CGATCAACAAAGACTGATTTTTGCCGGCAAACAATTGGAGGATGGGAGAACTCTGTCCGA 80600 Query 111273 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 |||||| || ||||| || || || ||||||| ||||| || || | || ||| Sbjct 80601 TTATAACATCCAAAAGGAGTCCACGTTACATTTGGTGTTACGCTTGAGAGGCGGC 80655 >seq16708 Length=1145218 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| ||||||||||| |||||||| ||||| || || ||| | || || | Sbjct 1011016 AATGCAGATTTTTGTCAAGACGTTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1010957 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 |||| | ||| | || || || ||| ||||||||||| |||| || || Sbjct 1010956 CGATACGATTGAAAACGTCAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCGGACCA 1010897 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 111276 |||| | || || | || || |||||| | |||||| | | ||| | | ||||| Sbjct 1010896 ACAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCT--CTGATTAC 1010839 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||||||||||||||| || || ||| | || | || || || ||||| Sbjct 1010838 AATATACAAAAAGAATCCACTCTGCATCTTGTACTCCGCCTTCGAGGTGG 1010789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421551238811968