Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_031930.1 Length=59518 Score E Sequences producing significant alignments: (Bits) Value seq30442 289 1e-73 >seq30442 Length=231 Score = 289 bits (320), Expect = 1e-73 Identities = 202/230 (88%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48043 GACGCGGACTTCCGGGTGTAACGTACGTCATTCTGCATCGACTTGATCGTAGCGCGCAGC 48102 |||||||||| |||||||| ||||||| ||||||||||||||| | ||| ||||||||| Sbjct 230 GACGCGGACTGTCGGGTGTACCGTACGTTATTCTGCATCGACTTAACCGTGGCGCGCAGC 171 Query 48103 TTAGTCGTTTCCCGGTCGTGCTCGGTGTTATCTTCGGCGTGACGGCGGTGGGCCTCGGAT 48162 || || | |||| |||||||||||||||||| || ||||| ||||| ||||| |||| Sbjct 170 TTTGTGATCTCCCTGTCGTGCTCGGTGTTATCGTCAGCGTGTCGGCGATGGGCTTCGGCC 111 Query 48163 AACTGGATTTGCAGACTGGTGACGGCGCTCTCTGCGGTATCGAGGCTGCGGCTCTTGTTA 48222 ||||||||||||||||||||||| ||||| || || ||||||||||||||| ||||| || Sbjct 110 AACTGGATTTGCAGACTGGTGACAGCGCTTTCCGCCGTATCGAGGCTGCGGGTCTTGGTA 51 Query 48223 TCCAGCGCTTCACGTAGCGCGGCCAGTTCGCCCGGCGTGATGTCGGCGAG 48272 ||||||||||| ||||| ||||||||||||||||||||||||| |||||| Sbjct 50 TCCAGCGCTTCGCGTAGTGCGGCCAGTTCGCCCGGCGTGATGTTGGCGAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190221704183680