Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 120 3e-22
seq21718 109 5e-19
>seq16708
Length=1145218
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| | || |||| |||||||| || || ||| ||||| |||||||| |||||
Sbjct 1010105 CCGCCTCTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAA 1010164
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || | | || ||||| || || || ||||| |||| || |||||||||| |||
Sbjct 1010165 AGCGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1010224
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | || |||||| ||| |||| || | || | | |||||| | ||| ||
Sbjct 1010225 ATTCCTTCTTTGTCC-TGAATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAAC 1010283
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | ||||||||||| || |||| ||||||||| |||||||||||
Sbjct 1010284 CTCGAGGGTTATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTGCAT 1010331
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| | || |||| |||||||| || ||| |||||||| || || || || |||
Sbjct 1010333 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1010392
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| |||||| | || ||||| || || || ||||| ||||| || |||||||||| ||
Sbjct 1010393 AGTGTGCGCCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGT 1010452
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||| |||||| ||| | || || | || | | || ||| | ||| ||
Sbjct 1010453 ATTCCCTCTTTGTCC-TGAATCTTGGCCTTGACATTCTCGATCGTATCGGAAGCCTCAAC 1010511
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | |||||||| || || |||| ||||| || |||||||||||
Sbjct 1010512 CTCGAGGGTTATCGTCTTGCCTGTCAATGTCTTGACAAAAATCTGCAT 1010559
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||||||| |||||| |||||| || ||||| || || || || || || | || ||
Sbjct 653833 ACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTTCGTCCATCCTCT 653892
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
| ||||||||| ||||| |||| ||||| || || | |||| | |||||||||| |
Sbjct 653893 AACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 653952
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
||||| |||| | | ||||| | || || |||| || || |||||
Sbjct 653953 ATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAAGGTGATGGTTTTC 654012
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || ||||||||||||||||||||
Sbjct 654013 CCTGTGAGAGTCTTTACGAAAATCTGCAT 654041
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||| ||| || || ||||||||||||||| ||||| || | || || | || ||
Sbjct 654061 ACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGACAAAGTACGTCCATCCTCC 654120
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| ||||| |||| ||||| || || | |||| | |||||||||| |
Sbjct 654121 AGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 654180
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
||||| |||| | | ||||| | || || |||| || || |||||
Sbjct 654181 ATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTC 654240
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || ||||||||||||||||||||
Sbjct 654241 CCTGTGAGAGTCTTTACGAAAATCTGCAT 654269
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||||||| |||||| |||||| || ||||| || || || || || || | || ||
Sbjct 654517 ACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTTCGTCCATCCTCT 654576
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
| ||||||||| ||||| |||| ||||| || || | |||| | |||||||||| |
Sbjct 654577 AACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 654636
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
||||| |||| | | ||||| | || || |||| || || |||||
Sbjct 654637 ATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTC 654696
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || ||||||||||||||||||||
Sbjct 654697 CCTGTGAGAGTCTTTACGAAAATCTGCAT 654725
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707
|||| |||||||| || ||| |||||||| || || || || ||||| ||||| |
Sbjct 1011029 CGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCA 1011088
Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767
|| ||||| || || || ||||| |||| || |||||||||| |||| | || |||
Sbjct 1011089 TCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTG 1011148
Query 41768 TCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCACCTCCACCGTTAT 41826
||| ||| |||| || | ||| || || ||| | ||| ||||| | |||||
Sbjct 1011149 TCC-TGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTAT 1011207
Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| || || |||| ||||| || |||||||||||
Sbjct 1011208 CGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 1011243
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || || ||||||||| |||||||| || ||
Sbjct 1009877 CCTCCTCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCAGAA 1009936
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || | |||||| || ||||| |||| | || ||||||| |||
Sbjct 1009937 AGTGTGCGTCCATCTTCTAACTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCCGGTGGA 1009996
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | || ||||| ||| |||| |||| || | | || ||| || ||| ||
Sbjct 1009997 ATTCCTTCTTTGTCT-TGAATTTTAGCTTTCACATTTTCGATGGTATCGGACGCCTCGAC 1010055
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || || ||||| ||||| || |||||||||||
Sbjct 1010056 TTCCAATGTGATAGTCTTCCCAGTCAGAGTCTTAACAAAAATCTGCAT 1010103
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || |||||||| ||| || || || || || || || |||
Sbjct 1010789 CCACCTCGAAGGCGGAGTACAAGATGCAGAGTGGATTCTTTTTGTATATTGTAATCAGAG 1010848
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || ||||| || || || ||||| ||||| || |||||||||| |||
Sbjct 1010849 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGA 1010908
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCAC 41814
| | || ||||| ||| | || || | ||| || || ||| | ||| ||
Sbjct 1010909 ATTCCTTCTTTGTCT-TGAATCTTGGCCTTGACGTTTTCAATCGTATCGGAAGCCTCAAC 1010967
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | |||||||| || || |||| |||||| || |||||||||||
Sbjct 1010968 CTCGAGGGTTATCGTCTTGCCTGTCAACGTCTTGACAAAAATCTGCAT 1011015
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||| ||| || || ||||||||||||||| || || || || || || | || ||
Sbjct 654289 ACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGATAGAGTTCGTCCATCCTCT 654348
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
|| |||||||| ||||| |||| ||||| || || | |||| | |||||| ||| |
Sbjct 654349 AGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTATCCTGG 654408
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
||||| |||| ||| | | || || | || || |||| || || |||||
Sbjct 654409 ATTTTG-GCTTTCACGTTTTCGATCGTATCTGAAGCTTCGACTTCCAGGGTGATAGTTTT 654467
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || ||||||||||||||||||||
Sbjct 654468 CCCTGTGAGAGTCTTTACGAAAATCTGCAT 654497
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||| ||| || || || ||||||||||| || || || || || || | || ||
Sbjct 654745 ACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGTCCATCCTCT 654804
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
|| |||||||| ||||| |||| ||||| || || | |||| | |||||| ||| |
Sbjct 654805 AGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTATCCTGG 654864
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
||||| |||| ||| | | || || | || || |||| || || |||||
Sbjct 654865 ATTTTG-GCTTTCACGTTTTCGATCGTATCTGAAGCTTCGACTTCCAGGGTGATAGTTTT 654923
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || ||||||||||||||||||||
Sbjct 654924 CCCTGTGAGAGTCTTTACGAAAATCTGCAT 654953
>seq21718
Length=958615
Score = 109 bits (120), Expect = 5e-19
Identities = 139/189 (74%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734
|||||||||||||| ||||| |||||||| | || || | ||||| || || || |||
Sbjct 51083 TTCTGAATGTTATAATCGGAAAGGGTGCGTCCATCCTCCAATTGCTTTCCAGCAAAGATC 51142
Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGA 41793
| |||||||| || | || | | ||| |||| | ||| | ||||| |||| |
Sbjct 51143 AAACGCTGTTGATCGGGTGGGATTCCCTCTTTGT-CTTGAATCTTTGCTTTCACATTCTC 51201
Query 41794 CACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853
| ||||||| | ||| ||||| | || ||||||||||||||||| || || |||||
Sbjct 51202 GATAGTGTCGGAAGCCTCTACCTCGAGGGTAATCGTTTTACCCGTCAGGGTTTTCACGAA 51261
Query 41854 AATCTGCAT 41862
||||||||
Sbjct 51262 TATCTGCAT 51270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462011777641600
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