Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq925 192 6e-44 >seq925 Length=3171676 Score = 192 bits (212), Expect = 6e-44 Identities = 463/694 (67%), Gaps = 14/694 (2%) Strand=Plus/Minus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTAC 16095 ||| ||||| ||||| ||||| | |||| | ||||| || || || || ||| Sbjct 2021792 ATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAGGTTTAC 2021733 Query 16096 CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGT 16155 || | || | |||||| |||| |||||| || ||| ||||| ||||| || | Sbjct 2021732 AGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGATTTCAAT 2021673 Query 16156 GGCTCGTGTTTCAGACGG-TGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGC 16214 ||| | | | || | | || | | |||| ||||| | ||||||||| || | Sbjct 2021672 AATACGT-TCCCTGCTGGGTTTCTGTATCAAATGTTGGAACATCAAACACGCGAAATCAC 2021614 Query 16215 AATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTC 16274 |||||| || ||||| | ||| | || ||||| || ||||| || |||||| | Sbjct 2021613 AATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCATTAAAC 2021554 Query 16275 CTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAG 16334 | |||||||| | ||| || || | ||||| || ||||||||| || ||||||| Sbjct 2021553 CACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCTTCAACAG 2021494 Query 16335 ATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTA 16394 ||||| || |||| ||||| | | | ||| || | |||||| | | Sbjct 2021493 CGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAAGAAATCCAAGCCAGCG 2021434 Query 16395 CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATT--TCTC 16452 |||| || || || | || | | | |||||| || || || || ||||| | |||| Sbjct 2021433 CCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGCATTGAACAAATAGTCTC 2021374 Query 16453 TTT--TTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGT 16510 ||| || | | || | ||||| || ||||| | || || |||||||||||||| Sbjct 2021373 TTTGTTTGCCG----TCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAGTGC 2021318 Query 16511 ATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC- 16569 | || || || || || ||||| || ||||| || || ||||||| || ||| ||||| Sbjct 2021317 ACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACTTCT 2021258 Query 16570 -CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACG 16628 || ||| ||||| ||| || ||||| || ||||| || || |||||||| | Sbjct 2021257 TGACTGAAA--CGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGG 2021200 Query 16629 CCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAAT 16688 | |||| |||| || |||| | |||||| ||||| |||||| | ||||| Sbjct 2021199 CTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCGTGCCCAATCATCTAAAT 2021140 Query 16689 CTTTGGATATATCCACTTCTTCTGGCGTCCAAAA 16722 | ||||||| ||| || ||||| |||||||| Sbjct 2021139 CCTTGGATAAATCTACCTCTTCCACGGTCCAAAA 2021106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511402854819920