Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq969 125 6e-24 >seq969 Length=5813909 Score = 125 bits (138), Expect = 6e-24 Identities = 334/503 (66%), Gaps = 12/503 (2%) Strand=Plus/Minus Query 18615 TTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGG 18674 ||||| | |||||||||||||| || |||||| | ||||| | || || ||| | ||| Sbjct 2586049 TTTCCATTATTAACTACAAAGCGGGTATTTTGGCGTGCCGTTGCTGAGGAATTGCTCTGG 2585990 Query 18675 TTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATATGGGAT 18734 ||||| | ||| || ||| | ||| ||| | ||| ||||||| ||||||||| Sbjct 2585989 TTTATTCACGGTAATACTGATGCAAAAATACTTCAAGAAAAAAATATACATATATGGGAT 2585930 Query 18735 ATATACGG--ATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGGGGG 18792 | || | |||||| | || || | | ||| ||| | | | || | Sbjct 2585929 GGAAACAGCAATCGAG--AGTTCCTTGACAAATGTGGTTTCACCAGTCGTGAAGAAGGCG 2585872 Query 18793 ACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTC 18852 | | || || ||||||| || |||||| | |||||||| || |||| ||| Sbjct 2585871 ATTTGGGGCCTGTTTACGGTTTTCAGTGGCGTCATTTTGGTGCCAAATACCGTACTTGT- 2585813 Query 18853 AATCAAACTATTTACAGC---AAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTA 18909 || ||| ||| || |||| || ||||| || ||| || || || || || | Sbjct 2585812 AAGGAAA--ATTACAAGGGTGAAGGCATAGATCAACTTCAACAAGTAATTGACACTATCA 2585755 Query 18910 AAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCT 18969 ||| ||||| | |||| |||| || || || | |||||||| |||||||| Sbjct 2585754 AAAACAACCCTAATGACCGAAGAATAATAATGTCTGCATGGAATCCCGTTGATATCCCAG 2585695 Query 18970 TAATGGTACTACCTCCATGTCACACGTTATGT-CAGTTTTACGTTGCAAACGGTGAATTA 19028 ||||| |||| || ||||| || || || |||| |||||||||||| || | Sbjct 2585694 AAATGGCGTTACCACCTTGTCATT-GTCTTGCGCAATTTTTCGTTGCAAACGGAGAGCTG 2585636 Query 19029 TCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCT 19088 ||||| ||| | ||||| | | |||||||| | || |||||||||||||||||| Sbjct 2585635 TCCTGTCAATTGTACCAACGTAGCGCCGATATGGGATTGGGCGTACCGTTCAACATTGCT 2585576 Query 19089 GGATATGCACTTCTTACCTACAT 19111 ||| | | ||||||||||| Sbjct 2585575 TCGTATTCTTTACTTACCTACAT 2585553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399495206667270