Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq454 98.7 9e-16 seq1310 96.9 3e-15 seq145 96.9 3e-15 >seq454 Length=983520 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || ||||| ||||||||||| || || ||||| || Sbjct 254903 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTCGAACCATCA 254844 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || ||||| |||||| | ||| ||||||| Sbjct 254843 GATACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 254784 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | || ||||| ||||||||||||||||| ||| || | || ||||| Sbjct 254783 CAACGTTTGATTTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAAC 254724 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || ||||| ||||| ||||| |||| || || || || || || Sbjct 254723 ATCCAAAAGGAGTCTACCCTTCATTTGGTATTGCGTTTGCGCGGTGG 254677 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || ||||| ||||||||||| || || ||||| || Sbjct 254675 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAACCATCA 254616 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || || || |||||| | || ||||||| Sbjct 254615 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 254556 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| ||||| || || |||||| || || |||| ||||| Sbjct 254555 CAACGTTTGATCTTTGCCGGCAAGCAGCTAGAAGATGGACGCACCTTGTCCGACTACAAC 254496 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || |||||||||||||| || |||| || || || || || || Sbjct 254495 ATCCAAAAGGAATCTACTCTCCATTTGGTCTTGCGTTTGCGTGGTGG 254449 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || ||||||||||| ||||| ||| ||| ||||| || Sbjct 253736 ATGCAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCA 253677 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || || || |||||| | || ||||||| Sbjct 253676 GATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGATCAA 253617 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATT--CCAAAACTATGGCCGATTACA 29139 || | | || || || || || || ||||||||| | | | ||| |||| |||| Sbjct 253616 CAGCGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATGGACGTACATTAT--CCGACTACA 253559 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | || || ||||||||||| || || ||||| |||| | || ||||| Sbjct 253558 ACATCCAAAAGGAATCTACCCTCCATTTGGTGCTACGTCTTCGCGGAGG 253510 >seq1310 Length=3030561 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || || |||||||| |||| || || ||||| || || || || Sbjct 644978 AAAATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCA 645037 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | || | || ||||| || ||||||||| | || |||| Sbjct 645038 TCTGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGAT 645097 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 |||||| | | ||||| || ||||||||| |||||||| ||| || |||||||| Sbjct 645098 CAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGATTAC 645157 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||| || ||||| || || |||||| ||||||| || Sbjct 645158 AATATCCAAAAGGAGTCAACCCTTCACTTGGTGTTGCG 645195 >seq145 Length=1338480 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| | ||||| || ||||| || || |||||| | Sbjct 899038 AATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCTC 898979 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| ||||||| |||||||||||| | ||| ||||| Sbjct 898978 GGATACTATCGAGCATGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCCCCCGATCA 898919 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | | || || ||||| ||||||||||||||| ||| | || || || || Sbjct 898918 ACAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCGTACTTTAGCTGACTATAA 898859 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||| || ||||| ||||| | ||| | ||| Sbjct 898858 TATCCAAAAGGAGTCTACCTTACACTTAGTG 898828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428326572056930