Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq925 217 2e-51 seq454 104 2e-17 >seq925 Length=3171676 Score = 217 bits (240), Expect = 2e-51 Identities = 396/572 (69%), Gaps = 6/572 (1%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || ||||| || |||||||| || ||||| || | |||||||| || | Sbjct 2021092 AGGCAGAAGCGTCTTTTTGGACCGTGGAAGAGGTAGATTTATCCAAGGATTTAGATGATT 2021151 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 ||| || | | |||||||| | ||||| | |||||| | |||||||| |||| Sbjct 2021152 GGGCACGACTTACTGACAACGAAAGACATTTTGTTTCGCACGTATTAGCCTTTTTTGCCG 2021211 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 || || || || || || || ||| |||| || |||||| ||| || || || || Sbjct 2021212 CCTCGGATGGTATTGTAAATGAAAATTTGGTAGAACGTTTCAGTCAAGAAGTTCAAGTAA 2021271 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | ||||||||||| |||||||| ||||| ||||| ||||| || |||||||| ||||||| Sbjct 2021272 CGGAGGCGCGGTGTTTCTACGGTTTTCAAATCGCTATGGAAAATGTGCACTCAGAAATGT 2021331 Query 116895 ATTCGACCCTCATCGACACGTA-CGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAAC 116953 || | | || ||||| || | | | | | | || | |||||| || Sbjct 2021332 ATAGCATATTAATTGACACATATATTAAGGACGGCAAACAAAGAG-ACTATTTGTTCAAT 2021390 Query 116954 GCCATCGAGACGATGCCGTGC-GTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC 117012 || || ||||||||||| ||| || || ||||| || ||||||||| ||||| Sbjct 2021391 GCAATTGAGACGATGCC-TGCTGTTAAGCGTAAGGCTGATTGGGCGCTGGCTTGGAT-TT 2021448 Query 117013 CGGCAGAG-AGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 | || || || ||| || || || | | || || || || || || ||| | | Sbjct 2021449 CTTCAAAGTCTGCAAACTTTGGTGAACGTATAATTGCATTTGCCGCTGTTGAAGGCATAT 2021508 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 ||||| |||||||| || | || |||||||| |||||||| || | ||||| ||| Sbjct 2021509 TCTTTAGCGGCAGTTTTGCATCAATCTTTTGGCTTAAGAAACGTGGTTTAATGCCGGGCT 2021568 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 | || ||| ||| ||| | ||||| | ||||||||| | ||||| || || || |||| Sbjct 2021569 TAACATTCTCCAATGAGTTGATCTCACGTGACGAGGGTTTACATTGTGATTTCGCGTGTT 2021628 Query 117192 TGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223 || ||||| | |||||| | ||| ||| ||| Sbjct 2021629 TGATGTTCCAACATTTGATACAGAAACCCAGC 2021660 >seq454 Length=983520 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || |||||||||||||| | || |||||| | | Sbjct 254903 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTCGAACCATCA 254844 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || || | || || || || || ||| | || || Sbjct 254843 GATACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 254784 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || |||||||| ||||| |||| ||||| | ||||||||| Sbjct 254783 CAACGTTTGATTTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAAC 254724 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| |||||| | || || ||| | || ||||| ||| | || || Sbjct 254723 ATCCAAAAGGAGTCTACCCTTCATTTGGTATTGCGTTTGCGCGGTGG 254677 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || |||||||||||||| | || || ||| | | Sbjct 254675 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAACCATCA 254616 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||||| || || || || | || || Sbjct 254615 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 254556 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || ||||| ||||| || || | |||||| | |||||||||| Sbjct 254555 CAACGTTTGATCTTTGCCGGCAAGCAGCTAGAAGATGGACGCACCTTGTCCGACTACAAC 254496 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| ||||| | || || ||| | || ||||| ||| | || ||| Sbjct 254495 ATCCAAAAGGAATCTACTCTCCATTTGGTCTTGCGTTTGCGTGGTGGC 254448 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || ||||||||||||||| | || || || |||| | Sbjct 254447 ATGCAAATTTTCGTTAAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGA-GCCATC 254389 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | | |||| ||||| | ||||| || || || ||| | || || Sbjct 254388 TGATACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAAGGTATTCCCCCAGATCA 254329 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| || ||||| ||| |||| || | ||||| | |||||||| Sbjct 254328 ACAACGTTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGACGCACTTTGTCTGACTACAA 254269 Query 40869 CATCCAGAAGGA 40880 |||||| || || Sbjct 254268 CATCCAAAAAGA 254257 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | |||||||| ||||||||| | || |||||| | | Sbjct 253736 ATGCAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCA 253677 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||||| || || ||||| | || || Sbjct 253676 GATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGATCAA 253617 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | ||| || || |||||||| || | || || | |||||||||| Sbjct 253616 CAGCGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATGGACGTACATTATCCGACTACAAC 253557 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| ||||| | || || ||| | ||| Sbjct 253556 ATCCAAAAGGAATCTACCCTCCATTTGGTG 253527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515207568926560