Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq969 156 6e-33 seq1310 129 9e-25 seq145 123 4e-23 seq1509 118 2e-21 seq454 91.5 2e-13 >seq969 Length=5813909 Score = 156 bits (172), Expect = 6e-33 Identities = 425/644 (66%), Gaps = 15/644 (2%) Strand=Plus/Plus Query 205321 TTTATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTA 205380 ||||| | ||||| ||||| || ||| |||| || ||||| | ||| | | Sbjct 2585415 TTTATAATCAATTTAGGAAACGGACGAGGTTTACGGGTTATTTGTTCTGTTAGCGGTTCA 2585474 Query 205381 ATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAA 205440 ||||| | || ||||| || | |||| | |||| | || ||| ||| | | Sbjct 2585475 ATATGCGTTTTGTAGATATGAGCGTCTCCAAGAGTATGCACGAAGTCACCTGGACGAAGA 2585534 Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500 ||||||| |||||||||||| || || | |||| ||| ||||| || || ||||| Sbjct 2585535 TTAGTTATATGTGCAATCATGTAGGTAAGTAAAGAATACGAAGCAATGTTGAACGGTACG 2585594 Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATT 205560 || || |||||||| || | ||| |||| |||||| | || | | || | Sbjct 2585595 CCCAATCCCATATCGGCGCTACGTTGGTACAATTGACAGGACAGCTCTCCGTTTGCA--- 2585651 Query 205561 ACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGA 205620 || |||||| ||| ||||||||||||||||| |||| | | | ||| | ||| Sbjct 2585652 ACGAAAAATTGCGCAAGACAATGACAAGGTGGTAACGCCATTTCTGGGATATCAACGGGA 2585711 Query 205621 TTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATA 205680 ||||| || | | |||||| ||| | ||| || ||||| || | | || | Sbjct 2585712 TTCCATGCAGACATTATTATTCTTCGGTCATTAGGGTTGTTTTTGATAGTGTCAATTACT 2585771 Query 205681 TGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATA---TATTTA 205737 ||| | |||||| | |||| | | |||||| ||| || | || ||||| Sbjct 2585772 TGTTGAAGTTGATCTATGCCTTCACCCTTGTAATTT---TCCTTACAAGTACGGTATTTG 2585828 Query 205738 GCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCA 205797 ||||||||||||||||| |||||||| ||||| || || ||||| ||||||| | | Sbjct 2585829 GCACCAAAATGACGCCACTGAAAACCGTAAACAGGCCCCAAATCGCCTTCTTCACGACTG 2585888 Query 205798 TTAAAACCACGtttttttatatatttt--aatgatccattttcatcccaaatatggattc 205855 | ||||||| ||| | | | | | | || | ||| ||||||| ||||| || Sbjct 2585889 GTGAAACCACATTTGTCAAGGAACTCTCGATTG--CTGTTTCCATCCCATATATGTATAT 2585946 Query 205856 ctttattttttaGAATATTTGTATTAGT-TGATCCAGATATAAACCATAATAATTCTTCA 205914 ||| | || || || |||| || ||| | | | || |||||||| | ||||| ||| Sbjct 2585947 TTTTTTCTTGAAGTATTTTTGCATCAGTATTACCGTGA-ATAAACCAGAGCAATTCCTCA 2586005 Query 205915 ACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958 ||| | | |||||| | ||||| || ||||||||||| Sbjct 2586006 GCAACGGCACGCCAAAATACCCGCTTTGTAGTTAATAATGGAAA 2586049 >seq1310 Length=3030561 Score = 129 bits (142), Expect = 9e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || ||||| || || || || || ||| | ||| | || || Sbjct 644980 AATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCATC 645039 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| ||||| ||||| ||||||||||| ||||| ||||| Sbjct 645040 TGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCA 645099 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || |||||||| || ||| |||| || || ||||| || Sbjct 645100 ACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGATTACAA 645159 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| || ||||| | || ||||| || ||| | || |||||||| Sbjct 645160 TATCCAAAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTGCGTGGTGGTAT 645210 >seq145 Length=1338480 Score = 123 bits (136), Expect = 4e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 124537 CAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596 |||||||||| || | || || || || || || || || ||| | ||| | ||| | Sbjct 899039 CAATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCT 898980 Query 124597 ATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||||| || || |||| || ||||||||||||||||||||||| || || ||| Sbjct 898979 CGGATACTATCGAGCATGTTAAGGCA-AAAATTCAAGATAAAGAAGGTATTCCCCCCGAT 898921 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||| | | ||||| || ||||||||| | || ||| |||| || |||| || ||| Sbjct 898920 CAACAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCGTACTTTAGCTGACTAT 898861 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| ||||| || || || || || || || | ||| | ||||||| Sbjct 898860 AATATCCAAAAGGAGTCTACCTTACACTTAGTGCTGCGTCTTAGAGGTGG 898811 >seq1509 Length=4395057 Score = 118 bits (130), Expect = 2e-21 Identities = 247/369 (67%), Gaps = 3/369 (1%) Strand=Plus/Minus Query 202863 TACAT-CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNN 202921 ||||| |||||||||||||||||||| || || || | | ||| ||||| |||||| Sbjct 619305 TACATACCAACATATCCATTTGGATCTCGACCGTCCAAACTATACTTATCGTTTAAAAGA 619246 Query 202922 NNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAA 202981 | ||| |||||||| | | |||||| | ||||||||| |||||| Sbjct 619245 ATAGCTACTTCCAGTGCCTCTTCTGGCGTAGAAGACCATTCGAGTATTTTTTTGGCCCAA 619186 Query 202982 TACATTCTTAAATATCCATGCATTTTACCAT-AGATAATCATTTGTTTTTGTGATGCATT 203040 ||||||| | | ||||||||||||| || | | || | | || || |||||||| Sbjct 619185 TACATTCGCAGAAATCCATGCATTTTGCCTTCACGTACT-AACTGCAACTGCGATGCATT 619127 Query 203041 CCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCT 203100 ||| | || ||| || || || | || | || | | | || | | | Sbjct 619126 CCAAAGATCGTCGTGTGTGTGAGCTTGCTCGAATTCAGCCAGTGTGTAGGCAGGAGAACG 619067 Query 203101 AGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATT 203160 |||| || || |||| || ||||| ||||||| || || |||| ||| Sbjct 619066 TTTATCCTTGCGGTGATCATCAAGCGTTTTAGCTGCCCAAGCATGTAATCCTTTTAGATT 619007 Query 203161 ATCGTAATTTTCATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTC 203220 |||||||| |||||| ||||||||||||||||| | |||| |||| | || ||||| Sbjct 619006 ATCGTAATGTTCATTGTAATAACAAAAATTATCTGCCAATTCTCTACGCACTATGGCTTC 618947 Query 203221 TTCACAAAA 203229 ||| ||||| Sbjct 618946 TTCGCAAAA 618938 Score = 114 bits (126), Expect = 2e-20 Identities = 247/374 (66%), Gaps = 0/374 (0%) Strand=Plus/Minus Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927 |||||||| ||||||||||| || | || | | ||||||||||| |||| Sbjct 622126 CCAACATAGCCATTTGGATCTCGAGCGTCAAGACTGTATTTATCATTCAAATGAATAGCG 622067 Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987 || || | |||||||| || |||||| ||||||||||| |||||||||||| Sbjct 622066 GTTTTTAAGGCCACCTCTGGTGAAGATGACCATTCCAATATTTTTTTTGCCCAATACATT 622007 Query 202988 CTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAA 203047 | | | |||| |||||||| || | | || || ||| | || | |||||||| | | Sbjct 622006 CGCAGAAATCCGTGCATTTTGCCTTCGTGAACCAATTGCATCTGAGCAGCATTCCAAAGA 621947 Query 203048 TTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCA 203107 | ||||| || ||| ||||| || || |||| || | || | ||| Sbjct 621946 TCATCATGTGTACTTGCTCCTTCAAATTCTGTGAATGCATATGTAGGATTGCGTTCATCT 621887 Query 203108 TTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAA 203167 || |||||| | ||| ||||| || |||||| || || || | ||||| ||| Sbjct 621886 GTTCGATGTTCTTCTAGAGTTTTGATGGCCCAAGGATACAATCCCTTAAGGTTATCATAA 621827 Query 203168 TTTTCATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAA 203227 || | || || ||||| |||||||| ||||| ||| ||| || || || || Sbjct 621826 TTCTTGTTGTAGTAACAGAAATTATCTGCCAGTTCACGGTGAACAATTGCCTCATCGCAG 621767 Query 203228 AAAACTTCTACCGA 203241 ||| | || || || Sbjct 621766 AAAGCCTCCACAGA 621753 >seq454 Length=983520 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| ||||| ||||| || || ||| | ||| | ||| || Sbjct 255923 AATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATTACTCTGGAGGTGGAACCATC 255864 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || ||| | || || || ||||| ||||||||||| || || ||||| Sbjct 255863 TGATACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCA 255804 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | ||||| || || || || || || ||| | || |||||| ||||| || Sbjct 255803 ACAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGACGTACATTATCCGATTACAA 255744 Query 124718 TAT 124720 || Sbjct 255743 CAT 255741 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || |||||||| || || | || |||| || | Sbjct 254447 ATGCAAATTTTCGTTAAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGAGCCATCT 254388 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || ||||| ||||| || |||||||| || || |||||| Sbjct 254387 GATACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAAGGTATTCCCCCAGATCAA 254328 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || || || || || ||| | || || || || || || Sbjct 254327 CAACGTTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGACGCACTTTGTCTGACTACAAC 254268 Query 124719 ATTCAAAAAGAATC 124732 || ||||||||||| Sbjct 254267 ATCCAAAAAGAATC 254254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755438945580800