Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1310 134 1e-26 seq454 98.7 9e-16 >seq1310 Length=3030561 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||||||||| | || ||||| ||||| || ||||||||| Sbjct 645209 TACCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGG 645150 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || |||||| ||| || | ||||| || ||| |||| | ||| || ||||| || | Sbjct 645149 ACAAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTG 645090 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||||| ||| || | ||||| |||||| | ||||| Sbjct 645089 GGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGA 645030 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || || || ||||| ||||| |||||||||||||| Sbjct 645029 CCTCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981 >seq454 Length=983520 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || || | ||| ||||| |||| ||||| || ||||| |||||||| ||| | Sbjct 254449 CCACCACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 254508 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||| || ||||| || || || |||| | ||| || ||||| ||||| Sbjct 254509 AAGGTGCGTCCATCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 254568 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || || |||||||| || || || || | |||| ||| || | || | || || Sbjct 254569 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGT-TCAAC 254627 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | ||||||||||||| || || || || || ||||| Sbjct 254628 CTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254675 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| || | ||| ||||| || | |||||||| ||||| |||||||| || Sbjct 254675 TACCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 254734 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || |||||| || || || ||||| || || | || | ||| || ||||| || | Sbjct 254735 ACAAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGG 254794 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||| ||| || || || || | |||| ||| || | || | ||| Sbjct 254795 GAATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGT-TCG 254853 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | || | ||||||||||||| || || || || || ||||| Sbjct 254854 ACCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604 || |||||||| |||||||| || || |||||| ||| || | ||| || || || Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313 Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664 |||| | ||| || ||||| || || || || ||||||||| ||||| || || Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | || | ||| || | ||| || || | ||| | ||||||||||||| |||||| Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433 Query 118725 ACAAAAATCTGCATG 118739 || ||||| |||||| Sbjct 254434 ACGAAAATTTGCATG 254448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433820851121752