Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq1255 102 9e-17 seq925 98.7 1e-15 seq1146 95.1 1e-14 >seq1 Length=10144477 Score = 114 bits (126), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 8103951 AAAAATTTACTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 8103892 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 8103891 TGACCACTATACTACCGAGGA 8103871 Score = 111 bits (122), Expect = 2e-19 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 60057 AAAAATTT---TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 7972677 AAAAATTTATTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 7972736 Query 60114 TACTCACCACTATACTACCGAGGATTG--AATAT 60145 |||| ||||||||||||||||||| || ||||| Sbjct 7972737 TACTGACCACTATACTACCGAGGACTGTTAATAT 7972770 Score = 104 bits (114), Expect = 3e-17 Identities = 88/108 (81%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 60034 ATAACAACAAATTAACGTTTATGAAAAATTT----TCTCCTCGGCAGGGAATCGAACCCT 60089 |||| || ||| ||||||| | ||| |||| ||||| || | |||||| |||||| Sbjct 7959987 ATAAAAAAAAAATAACGTTAAAAAAATATTTCATATCTCCCCGACGGGGAATTGAACCCC 7959928 Query 60090 GGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| ||||| |||||||||||| |||||| Sbjct 7959927 GGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGA 7959880 Score = 96.9 bits (106), Expect = 4e-15 Identities = 72/84 (86%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 60057 AAAAATTT---TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||||| ||||| || | |||||| |||||| ||||||||||||||||||||| | Sbjct 6195938 AAAAATTTCTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 6195879 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| |||||||||||| |||||| Sbjct 6195878 TACTAACCACTATACTATCGAGGA 6195855 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 1836957 TTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 1836898 Query 60122 ACTATACTACCGAGGAT 60138 ||||||||| ||||||| Sbjct 1836897 ACTATACTATCGAGGAT 1836881 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1837863 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1837804 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 1837803 TACTATCGAGGATTG 1837789 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 6180079 TTCTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 6180020 Query 60122 ACTATACTACCGAGGAT 60138 ||||||||| ||||||| Sbjct 6180019 ACTATACTATCGAGGAT 6180003 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 |||| | |||| || | |||||| |||||| ||||||||||||||||||||| ||||| Sbjct 8023798 AAATATACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 8023739 Query 60119 ACCACTATACTACCGAGGATTG 60140 |||||||||||| |||||| || Sbjct 8023738 ACCACTATACTATCGAGGACTG 8023717 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1837379 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 1837438 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 1837439 ATACTATCGAGGAT 1837452 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 1839461 TTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 1839402 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 1839401 ACTATACTATCGAGGA 1839386 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 6199734 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 6199675 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 6199674 ATACTATCGAGGAT 6199661 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 8512001 TTACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 8511942 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 8511941 CTATACTATCGAGGA 8511927 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 6181373 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 6181314 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 6181313 TACTATCGAGGA 6181302 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 8502170 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 8502111 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 8502110 TACTATCGAGGA 8502099 >seq1255 Length=13665606 Score = 102 bits (112), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 1694941 TTTTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 1695000 Query 60122 ACTATACTACCGAGGATTGAATATAT 60147 ||||||||| |||||| || |||||| Sbjct 1695001 ACTATACTATCGAGGACTG-ATATAT 1695025 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1696344 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1696403 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 1696404 TACTATCGAGGATTG 1696418 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 1694767 TTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 1694708 Query 60123 CTATACTACCGAGGATTGA 60141 |||||||| |||||| ||| Sbjct 1694707 CTATACTATCGAGGACTGA 1694689 >seq925 Length=3171676 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 5/104 (5%) Strand=Plus/Minus Query 60035 TAACAACAAATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCT 60094 ||| || ||||||| || |||| || |||| || | |||||| |||||| ||||| Sbjct 1579285 TAAAAAAAAATTAA-----ATCCAAAACTTCCTCCCCGACGGGGAATTGAACCCCGGTCT 1579231 Query 60095 CCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 60138 |||||||||||||||| ||||| |||||||||||| ||||||| Sbjct 1579230 CCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGAT 1579187 >seq1146 Length=4288032 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 3169738 TTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 3169679 Query 60122 ACTATACTACCGAGGA--TTGAAT 60143 ||||||||| |||||| |||||| Sbjct 3169678 ACTATACTATCGAGGATGTTGAAT 3169655 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/81 (86%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3302035 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 3302094 Query 60125 ATACTACCGAGGA--TTGAAT 60143 |||||| |||||| |||||| Sbjct 3302095 ATACTATCGAGGACGTTGAAT 3302115 Score = 93.3 bits (102), Expect = 5e-14 Identities = 82/103 (80%), Gaps = 7/103 (7%) Strand=Plus/Minus Query 60035 TAACAACAAATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCT 60094 ||| || |||| | | ||||||| ||||| || | |||||| |||||| ||||| Sbjct 3167622 TAAAAAAAAATCATCATTTATGA-------TCTCCCCGACGGGGAATTGAACCCCGGTCT 3167570 Query 60095 CCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 |||||||||||||||| ||||| |||||||||||| |||||| Sbjct 3167569 CCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGA 3167527 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3299556 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 3299615 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 3299616 TACTATCGAGGACTG 3299630 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| | |||| Sbjct 3170255 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGA-CACT 3170197 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 3170196 ATACTATCGAGGAT 3170183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571804691217680