Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq925 269 2e-67 >seq925 Length=3171676 Score = 269 bits (298), Expect = 2e-67 Identities = 503/729 (69%), Gaps = 20/729 (3%) Strand=Plus/Minus Query 16051 CAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTT 16110 || ||| | || || | ||| || || ||||| ||||| | ||| | | ||| || Sbjct 2021810 CAGTTCGACCAGCAAACGATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATT 2021751 Query 16111 CATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGC 16170 ||| || |||| || ||||| | ||| |||||||| || | || ||| || ||||| || Sbjct 2021750 CATACCAATTAGGTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGC 2021691 Query 16171 TTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTA---AT-AAGTGTTTAA 16226 |||| || || || | | ||| | | | |||||| || || |||| | Sbjct 2021690 TTCAGATATGATTTCAATAA-TACGTTCCCT---GCTGGGTTTCTGTATCAAATGTTGGA 2021635 Query 16227 ACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAA 16286 |||| | ||| || ||||||||||| || || ||||| | || ||||| || || | Sbjct 2021634 ACATCAAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGA 2021575 Query 16287 ATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG 16346 |||| | || ||||||| || ||||| |||| |||||| || | ||||| || Sbjct 2021574 ATGTTAAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGC 2021515 Query 16347 AAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttt 16406 ||||||||| |||||||| ||||||||||||| | || ||||| | || | Sbjct 2021514 TAAAGAATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAG--- 2021458 Query 16407 tactttcta----tccattttttagcccaatttgctttttgtttAACA-CAGTTCATGTT 16461 ||||| | |||| ||||||| || || | |||||| ||| ||| | Sbjct 2021457 -ACTTTGAAGAAATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGG-CATCGT 2021400 Query 16462 CTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAG 16521 ||| |||||||| || ||||| | | ||| ||||| || |||||| || || |||| Sbjct 2021399 CTCAATTGCATTGAACAAATAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAA 2021340 Query 16522 TAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCT 16581 || |||||||||||||| || | ||| ||||| || || |||||||| || || || | Sbjct 2021339 TATGCTATACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCG 2021280 Query 16582 AGCTTCGGATATTTGTACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTC 16640 || || | || ||| ||||| || | |||| || || | || ||||| || || || | Sbjct 2021279 CGCCTCCGTTACTTGAACTTCTTGACTGAAACGTT-CTACCAAATTTTCATTTACAATAC 2021221 Query 16641 CATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAA 16700 |||| || |||||||| || | || ||| || ||||| | ||||||| || | || Sbjct 2021220 CATCCGAGGCGGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAA 2021161 Query 16701 GTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAG 16760 || | ||| ||| ||||| || |||||||| |||||||| || ||||||||||| | Sbjct 2021160 GTCGTGCCCAATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACG 2021101 Query 16761 CAACAGCCT 16769 | | |||| Sbjct 2021100 CTTCTGCCT 2021092 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| |||||| ||||| | || |||| ||| || |||| | |||| | || Sbjct 2022069 TTTAGAAATCAGCATCTAACGTGAAAACATGATCCATTCTATTCGCAGTAACGCCCCATT 2022010 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | || ||||||| |||| |||||||||||||||| ||||| || |||||||| ||| || Sbjct 2022009 TCTGGTATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCATCTAATGAGATAAGTT 2021950 Query 16005 CCATAAAA 16012 |||||||| Sbjct 2021949 CCATAAAA 2021942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462501558791600