Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq969 167 2e-36 >seq969 Length=5813909 Score = 167 bits (184), Expect = 2e-36 Identities = 412/614 (67%), Gaps = 12/614 (2%) Strand=Plus/Minus Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 ||||| ||||||||||| || |||||||||||| | ||||| ||| || || | ||| Sbjct 2586049 TTTCCATTATTAACTACAAAGCGGGTATTTTGGCGTGCCGTTGCTGAGGAATTGCTCTGG 2585990 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGC 20163 |||||| | || || || | | ||| ||||||| | | || ||| Sbjct 2585989 TTTATTCACGGTAATACTGATGCAAAAATACTTCAAGAAAAAAATATACATATATGGGAT 2585930 Query 20164 GCACATGG--ATCTAAGCAATTTTTACACAGCAATG-GATTTGACAAC-CGTCAAGAGGG 20219 | | | | ||| | | || | ||| |||| | ||| || | ||| |||| || Sbjct 2585929 GGAAACAGCAATCGAG--AGTTCCTTGACA--AATGTGGTTTCACCAGTCGTGAAGAAGG 2585874 Query 20220 GGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACAT 20279 |||||||| ||||| || || ||||| ||| | |||||||| || |||| | || | Sbjct 2585873 CGATTTGGGGCCTGTTTACGGTTTTCAGTGGCGTCATTTTGGTGCCAAATACCGT-ACTT 2585815 Query 20280 G-AACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTA 20338 | || |||||| || |||| |||||||| | ||| | || ||| | || | Sbjct 2585814 GTAAGGAAAATTACAAGGGTGAAGGCATAGATCAACTTCAACAAGTAATTGACACTATCA 2585755 Query 20339 AAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTT 20398 ||| ||||| || ||| ||||||| || | | || ||||| | ||| | || Sbjct 2585754 AAAACAACCCTAATGACCGAAGAATAATAATGTCTGCATGGAATCCCGTTGATATCCCAG 2585695 Query 20399 TAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTG 20457 |||||| || || || |||||| || ||| ||||||| |||||| || || || Sbjct 2585694 AAATGGCGTTACCACCTTGTCATTGTCT-TGCGCAATTTTTCGTTGCAAACGGAGAGCTG 2585636 Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 || |||||| |||| ||||| ||| ||||||||| |||| || || ||||| ||||| Sbjct 2585635 TCCTGTCAATTGTACCAACGTAGCGCCGATATGGGATTGGGCGTACCGTTCAACATTGCT 2585576 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577 ||| | | ||||| || |||||||||||| | || || | | |||||||| Sbjct 2585575 TCGTATTCTTTACTTACCTACATGATTGCACATATAACTAATCTTCGTCCAGGTGACTTC 2585516 Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAG 20637 || || || | |||||||| ||||| ||| | ||||| ||||| ||| | ||| Sbjct 2585515 GTGCATACTCTTGGAGACGCTCATATCTACAAAACGCATATTGAACCGCTAACAGAACAA 2585456 Query 20638 TTAACACGACAACC 20651 |||| || |||| Sbjct 2585455 ATAACCCGTAAACC 2585442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399175213710670