Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq969 167 2e-36
>seq969
Length=5813909
Score = 167 bits (184), Expect = 2e-36
Identities = 412/614 (67%), Gaps = 12/614 (2%)
Strand=Plus/Minus
Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103
||||| ||||||||||| || |||||||||||| | ||||| ||| || || | |||
Sbjct 2586049 TTTCCATTATTAACTACAAAGCGGGTATTTTGGCGTGCCGTTGCTGAGGAATTGCTCTGG 2585990
Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGC 20163
|||||| | || || || | | ||| ||||||| | | || |||
Sbjct 2585989 TTTATTCACGGTAATACTGATGCAAAAATACTTCAAGAAAAAAATATACATATATGGGAT 2585930
Query 20164 GCACATGG--ATCTAAGCAATTTTTACACAGCAATG-GATTTGACAAC-CGTCAAGAGGG 20219
| | | | ||| | | || | ||| |||| | ||| || | ||| |||| ||
Sbjct 2585929 GGAAACAGCAATCGAG--AGTTCCTTGACA--AATGTGGTTTCACCAGTCGTGAAGAAGG 2585874
Query 20220 GGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACAT 20279
|||||||| ||||| || || ||||| ||| | |||||||| || |||| | || |
Sbjct 2585873 CGATTTGGGGCCTGTTTACGGTTTTCAGTGGCGTCATTTTGGTGCCAAATACCGT-ACTT 2585815
Query 20280 G-AACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTA 20338
| || |||||| || |||| |||||||| | ||| | || ||| | || |
Sbjct 2585814 GTAAGGAAAATTACAAGGGTGAAGGCATAGATCAACTTCAACAAGTAATTGACACTATCA 2585755
Query 20339 AAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTT 20398
||| ||||| || ||| ||||||| || | | || ||||| | ||| | ||
Sbjct 2585754 AAAACAACCCTAATGACCGAAGAATAATAATGTCTGCATGGAATCCCGTTGATATCCCAG 2585695
Query 20399 TAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTG 20457
|||||| || || || |||||| || ||| ||||||| |||||| || || ||
Sbjct 2585694 AAATGGCGTTACCACCTTGTCATTGTCT-TGCGCAATTTTTCGTTGCAAACGGAGAGCTG 2585636
Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517
|| |||||| |||| ||||| ||| ||||||||| |||| || || ||||| |||||
Sbjct 2585635 TCCTGTCAATTGTACCAACGTAGCGCCGATATGGGATTGGGCGTACCGTTCAACATTGCT 2585576
Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577
||| | | ||||| || |||||||||||| | || || | | ||||||||
Sbjct 2585575 TCGTATTCTTTACTTACCTACATGATTGCACATATAACTAATCTTCGTCCAGGTGACTTC 2585516
Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAG 20637
|| || || | |||||||| ||||| ||| | ||||| ||||| ||| | |||
Sbjct 2585515 GTGCATACTCTTGGAGACGCTCATATCTACAAAACGCATATTGAACCGCTAACAGAACAA 2585456
Query 20638 TTAACACGACAACC 20651
|||| || ||||
Sbjct 2585455 ATAACCCGTAAACC 2585442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399175213710670
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |