Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq925 242 4e-59 seq979 84.2 2e-11 >seq925 Length=3171676 Score = 242 bits (268), Expect = 4e-59 Identities = 485/711 (68%), Gaps = 12/711 (2%) Strand=Plus/Minus Query 14021 AGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTC 14080 ||||| | || || | ||| || | ||| |||||||| | ||||| | | ||||||| Sbjct 2021809 AGTTCGACCAGCAAACGATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTC 2021750 Query 14081 ATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCC 14140 ||||| ||||| |||||||| | | | ||||| ||||||| ||| || || || Sbjct 2021749 ATACCAATTAGGTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCT 2021690 Query 14141 TCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATT 14200 || ||| || ||||| ||| | || | | | | ||||| || || Sbjct 2021689 TCAGATATGATTTCAATAATACGTTCCCTGCTGGGTTTCTGTATCAAATGTTGGAACATC 2021630 Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 |||||||| ||||||||||| | ||||| || | || | || || || |||||| Sbjct 2021629 AAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTT 2021570 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 || || ||||| || || ||||| || | |||||| |||| || || ||| |||| Sbjct 2021569 AAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAG 2021510 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 ||||| || ||||| || ||||| || |||| ||||| ||||| ||| || Sbjct 2021509 AATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAA 2021450 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 || ||||| ||||| |||| || |||| | | ||| || ||||| ||| Sbjct 2021449 GAAATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGCA 2021390 Query 14441 TTAAATAAATGTTCCTTCTCTTTA--GTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14498 || || |||| || | | ||| || ||| ||| ||||| ||||| | || ||||| Sbjct 2021389 TTGAACAAATAGTCTCTTTGTTTGCCGTCCTT--AATATATGTGTCAATTAATATGCTAT 2021332 Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 ||||||| ||||| | ||||||||||| || |||||||| || ||||| | || || | Sbjct 2021331 ACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCG 2021272 Query 14559 ACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14617 ||| || || ||| | ||| | ||| ||||||||||||| || |||||||| Sbjct 2021271 TTACTTGAACTTCTTGACTGAAA-CGTTCTACCAAATTTTCATTTACAATACCATCCGAG 2021213 Query 14618 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---CTGAGTTTT 14674 || |||||||| || |||| || || ||| || || ||| ||| | ||| | Sbjct 2021212 GCGGCAAAAAAGGCTAATACGTGCGAAACAAA--ATGTCT-TTCGTTGTCAGTAAGTCGT 2021156 Query 14675 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCaaaaa 14725 |||||| |||||||||| || | |||||| || || || ||||||||| Sbjct 2021155 GCCCAATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAA 2021105 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 || |||||| ||||||||| ||||||| ||| | | || | | |||||||| ||| Sbjct 2022067 TAGAAATCAGCATCTAACGTGAAAACATGATCCATTCTATTCGCAGTAACGCCCCATTTC 2022008 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 || ||||||| |||| | ||||||||||| || ||||| || || | ||| ||| |||| Sbjct 2022007 TGGTATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCATCTAATGAGATAAGTTCC 2021948 Query 13976 ATAAAA 13981 |||||| Sbjct 2021947 ATAAAA 2021942 >seq979 Length=634042 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/152 (72%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 132188 GGAGTATAAGCGAGATCCCAAAAAGATGCATAATGGAACAATAGAATACACAAGTATAGA 132247 ||| | ||| | |||||| || || |||||||| || || |||||||||||| | || Sbjct 307427 GGATTTTAAACCAGATCCAAAGAAAATGCATAACGGTACCATAGAATACACATCTCGCGA 307368 Query 132248 TATGCATAAAGGTGTATCCCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTAT 132307 || |||||||| || | | ||| | ||||| ||||| || |||||| ||| Sbjct 307367 CGCTCACCAAGGTGTA---CCAACAATGCGCGCCGATTTTGAAATATTGGGATATAATAT 307311 Query 132308 AATAAAATGGTTAGGTGGTAAATTGCCATGGG 132339 |||| |||||| ||| || ||||||| |||| Sbjct 307310 AATAGAATGGTCAGGCAGTCAATTGCCTTGGG 307279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482334711048080