Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq1310 111 1e-19
seq454 111 1e-19
seq145 82.4 6e-11
>seq1310
Length=3030561
Score = 111 bits (122), Expect = 1e-19
Identities = 154/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| |||||| ||||| || ||||| || ||||| |||| || || || |||||||
Sbjct 645189 ACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACCATCTTCC 645130
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
||||||||||| || |||| | | ||||||||| || | ||||| || ||
Sbjct 645129 AATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 645070
Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295
|||| | || ||||| | | | | |||||| |||||| || | |||||| | ||
Sbjct 645069 ATTT-TGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTGATGGTCTT 645011
Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|| |||| |||||| |||||||| ||||||||
Sbjct 645010 ACCAGTCAGTGTTTTGACAAAAATCTGCATTTT 644978
>seq454
Length=983520
Score = 111 bits (122), Expect = 1e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 18132 GATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCA 18191
||||||||||| ||||||||||| | || || | ||||||||| || ||||| |||
Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313
Query 18192 TAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACC 18251
|||| | | ||||||||| ||| | |||||||| || |||| ||| ||
Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373
Query 18252 TGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTT 18311
| ||| || ||| ||||| ||| | ||||||| ||||||||||||| |||||
Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433
Query 18312 ACAAAAATTTGCAT 18325
|| |||||||||||
Sbjct 254434 ACGAAAATTTGCAT 254447
>seq145
Length=1338480
Score = 82.4 bits (90), Expect = 6e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188
|| || || ||||| || || ||||| || | || || |||||||| |||||| |||
Sbjct 898841 GTAGACTCCTTTTGGATATTATAGTCAGCTAAAGTACGACCATCTTCCAGTTGTTTTCCC 898900
Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248
|| | || | | ||||||||| ||| | ||||| ||||| ||||| | |||
Sbjct 898901 GCGAAAATTAAACGTTGTTGATCGGGGGGAATACCTTCTTTATCTTGAATTTTTGCCTTA 898960
Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308
|| || | | ||| || ||| ||| |||| |||||| | || || || | |||
Sbjct 898961 ACATGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTT 899020
Query 18309 TTTACAAAAATTTGCATT 18326
|| || ||||||||||||
Sbjct 899021 TTCACGAAAATTTGCATT 899038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379335650401470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |