Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1762 448 4e-121 seq925 228 7e-55 seq454 102 7e-17 >seq1762 Length=809008 Score = 448 bits (496), Expect = 4e-121 Identities = 1246/1896 (66%), Gaps = 41/1896 (2%) Strand=Plus/Minus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 ||||| || || || |||||||| ||||| || || || ||||| | |||||||||||| Sbjct 695480 TTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCG 695421 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 || || | ||| ||||| | ||||||||||| || || | ||| || ||| | || Sbjct 695420 GTTTTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGGT 695361 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | | || | ||| || || ||||| || |||||||| || || ||||| || ||| Sbjct 695360 TCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGCC 695301 Query 22286 ATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCT 22345 || ||||| | || | ||| || ||||| ||||| || ||||||| | || | | Sbjct 695300 ATTTTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTATGTTT 695241 Query 22346 AACGGTATCGATTCGATCCTCTGGACGGACCC---GTTATTGTGTATGATCAAATTTTTA 22402 ||||| ||||| || | || | || || | || || || || |||||| Sbjct 695240 TGGGGTATAGATTCAATGTTTTGTATTGAACCACGGCTAGTG---ATAATTTGATTTTTC 695184 Query 22403 ATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACT 22462 || ||| | ||| || || | | || | || | || |||| |||| || || Sbjct 695183 ATATCATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAACC 695124 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 |||||||| ||||| | || ||||| ||||| ||||| ||| |||| || |||||| Sbjct 695123 TGAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAGAT 695064 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 ||||| || |||| ||| || || || |||||||| ||||| || || | |||| ||| Sbjct 695063 TCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAGAG 695004 Query 22583 TTTCTCAAGCCGTGCTT-TGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGA 22641 || | | || || || | || |||| || || | | | ||| | ||| || || | Sbjct 695003 TTGCGTACACCATGTTTCTTAATTTTTTCT-TTCAACTCAGTCCAATTCCATAGTTCAGT 694945 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 |||| | || ||||||||||| || || || | || || |||| ||||| Sbjct 694944 CGGCTT---TTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTTC 694888 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTA 22761 || |||||||| || ||| || | | || | ||||||||| || || || || || || Sbjct 694887 ATAAGTTTCGTAAGGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCATA 694828 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCAT 22821 || || || || || |||| | |||||| | || |||||||||| || || Sbjct 694827 GTAAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTCGTAAGG-AT 694769 Query 22822 A-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTT 22880 | ||||| | | || ||||| || | ||| || || || ||||||||||| || | Sbjct 694768 AGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCC 694709 Query 22881 TCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCA 22940 | | ||| || || || || ||||| ||||| || ||| || || | || | Sbjct 694708 TGAAATTAGATTTCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTA 694649 Query 22941 AGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT 23000 | || | ||||| | || || | | ||| ||||| | Sbjct 694648 AATTCCGCGTCACGGTCTTAGTGACTTCCTTGAGGCGTTTAAAATCGTATTTTTTGTCTG 694589 Query 23001 GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGG 23060 || ||||||| | |||| ||| ||||| || | ||||||||| || |||||||| | Sbjct 694588 GTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTACCTCGTCAGGTG 694529 Query 23061 ACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCT 23120 | ||||| |||||||| || |||| ||| || || || || ||||| | ||| | Sbjct 694528 CTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATATTCTGTT 694469 Query 23121 GGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCT 23180 | || || |||| ||| || | |||||| || | ||| ||||| ||||||||||| |||| Sbjct 694468 GATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTCTCCACCT 694409 Query 23181 GCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAAC-----ACGTCGCACGTACCT 23235 |||| || || || | ||| | | || || | ||| | |||||| Sbjct 694408 GCGATTCTATAATGGAAAACCAAAGGCTTTGGGCTTTAACTTTCTTATTAGCACGT---- 694353 Query 23236 GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAG 23295 ||||||| || || ||| ||| ||| || ||||| |||| || ||| | Sbjct 694352 -CCTTCTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAACTTCGTGTAA 694294 Query 23296 GCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAACGCGTCT 23352 ||||| | | |||||||| | ||| || ||||| |||||| || | Sbjct 694293 TCCGGGACACTTATGTGGACACATTAATGACCA-AT--CCTCATTTGCTTCAACACGCTT 694237 Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 |||||| | || |||||||| | ||| || || | || | || || ||||||||| Sbjct 694236 CATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTCGATGCTCCTCTTT 694177 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 ||||| || || || ||||||||||| || || | || || ||||| ||||| | ||| Sbjct 694176 TCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGTA 694117 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 | ||||| || || |||| ||| ||| || ||||| || ||||| || ||| || Sbjct 694116 TATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTATT 694057 Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA 23592 | | || | | ||| || || | || || || | || | | || | || || |||| Sbjct 694056 GAAAACACGCAACATTGGTACCAAGCCATTTGATGTGC--CATTCGTGC-CCGCAATCGA 694000 Query 23593 A---CCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATAT 23649 | ||||| || || | ||||| | || || || || || | ||||| || || Sbjct 693999 AGTGCCTTTAGCGCGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAAT 693940 Query 23650 CATCGCGCATTG--TTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCG 23707 || || ||||| | | || ||| | ||||| || ||| ||| || | | Sbjct 693939 CAATGCACATTGATGTGCCGA-TGT-AAATATGCCATCAATGGAGTCGTCGACCATAGTT 693882 Query 23708 ACCAAGAAACACGAAGACATTTG-CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCT 23766 | | ||||| ||||| | ||| ||| | | |||||||| | || ||||| || Sbjct 693881 AATAGAAAACATGAAGATAATTGTGGCTGTTTG-GTAGCGGCAGCAAAGAGTGTTGGTGA 693823 Query 23767 GGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTC 23826 ||| || |||||||| | | || | | |||||| |||||||| || ||||| || || Sbjct 693822 GGCATGTGTAAAGTAACGTTCTGAAAGCAAATTGTATGTGTCGATTGCCGCATCTATATC 693763 Query 23827 CTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGAC 23886 ||| || |||||||| ||||| || ||||| | ||| | || || | || || | Sbjct 693762 CTCACCATGTATACCAATGGCTACACGCATTAACATATGCTGTGGCCGTTCAACAATTTT 693703 Query 23887 GCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTT 23946 || || | |||| | ||| ||||||| | || ||||| || ||||| | ||| Sbjct 693702 ACCATTCAACTTGAGTAAATAGGAACGTTCAAGAGTCTTAAACCCGAAATAATTATAACC 693643 Query 23947 AAAGTCACGATCGTGCACTATGGCCGAATTCAAACG 23982 || |||||||| | | || || || ||||| || Sbjct 693642 GAAATCACGATCATAAATAATTGCAGAGTTCAAGCG 693607 >seq925 Length=3171676 Score = 228 bits (252), Expect = 7e-55 Identities = 388/556 (70%), Gaps = 26/556 (5%) Strand=Plus/Plus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||||||||| || ||||||||||| ||||| ||||| | || |||||| | |||| Sbjct 2021092 AGGCAGAAGCGTCTTTTTGGACCGTGGAAGAGGTAGATTTATCCAAGGATTTAGATGATT 2021151 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 ||| || | || || ||| ||||| || ||||| || || ||||| |||| Sbjct 2021152 GGGCACGACTTACTGACAACGAAAGACATTTTGTTTCGCACGTATTAGCCTTTTTTGCCG 2021211 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CAAGAAGTGCAAGT 57766 | || ||||||||||| || || |||||||| ||| | ||||| |||||||| ||||| Sbjct 2021212 CCTCGGATGGTATTGTAAATGAAAATTTGGTAGAACG--TTTCAGTCAAGAAGTTCAAGT 2021269 Query 57767 GACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAAT 57826 ||||||||| | || || ||||| |||||| | || || ||||| ||||| |||||||| Sbjct 2021270 AACGGAGGCGCGGTGTTTCTACGGTTTTCAAATCGCTATGGAAAATGTGCACTCAGAAAT 2021329 Query 57827 GTATTCGCTACTCATCGATACGTACGTGAAGGAC----AACGACGAGAAACGTAGACTGT 57882 |||| || | || || || || | |||||| ||| | |||| || ||| Sbjct 2021330 GTATAGCATATTAATTGACACATATATTAAGGACGGCAAACAAAGAGA---CTA-TTTGT 2021385 Query 57883 TCAACGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTCAATCAAAT 57939 |||| || || || || ||||| || | ||| ||||| || ||| | | | Sbjct 2021386 TCAATGCAATTGAGACGATGCCTGC---TGTTAAGCGTAAGGCTGATTGGGCGCTGGCTT 2021442 Query 57940 GGA----TAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTC 57995 ||| | |||| | || | || | || | |||| || || ||||| || Sbjct 2021443 GGATTTCTTCAAAG----TCTGCAAACTTTGGTGAACGTATAATTGCATTTGCCGCTGTT 2021498 Query 57996 GAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTG 58055 ||||| ||||||||| ||||| ||||| |||| |||||| | |||||||| || | Sbjct 2021499 GAAGGCATATTCTTTAGCGGCAGTTTTGCATCAATCTTTTGGCTTAAGAAACGTGGTTTA 2021558 Query 58056 ATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGAT 58115 ||||| ||| | || || ||| |||||||| || || ||||||||| | ||| |||| Sbjct 2021559 ATGCCGGGCTTAACATTCTCCAATGAGTTGATCTCACGTGACGAGGGTTTACATTGTGAT 2021618 Query 58116 TTTGCGTGCCTAATGT 58131 || ||||| | |||| Sbjct 2021619 TTCGCGTGTTTGATGT 2021634 >seq454 Length=983520 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||| |||| ||||| || |||||| | || || ||||| || Sbjct 253736 ATGCAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCA 253677 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || ||||||||||| | || || || || Sbjct 253676 GATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGATCAA 253617 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||| | || |||||||| || ||| ||||||| | | | || | ||| || || Sbjct 253616 CAGCGTTTGATTTTCGCTGGTAAGCAGCTGGAAGA-TGGACGTACATTATCCGACTACAA 253558 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||| ||||| || || ||| |||| || Sbjct 253557 CATCCAAAAGGAATCTACCCTCCATTTGGTGCT 253525 Score = 98.7 bits (108), Expect = 9e-16 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| || ||| |||| |||||||| |||||| | || ||||| || || Sbjct 254448 CATGCAAATTTTCGTTAAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGAGCCATC 254389 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || | ||| ||||||||||| | || || || || Sbjct 254388 TGATACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAAGGTATTCCCCCAGATCA 254329 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 || ||| | || || || ||||| ||||||||||| | | | ||| || || || | Sbjct 254328 ACAACGTTTGATCTTTGCCGGCAAGCAGTTGGAAGA-TGGACGCACTTTGTCTGACTACA 254270 Query 31371 ACATTCAAAAAGAATC 31386 |||| ||||||||||| Sbjct 254269 ACATCCAAAAAGAATC 254254 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| |||| |||||||| ||||| | || |||||||| || Sbjct 254675 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAACCATCA 254616 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || |||||||||||| | || || || || Sbjct 254615 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 254556 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||| | || || || ||||| ||| | ||||| | | | || || ||| || || Sbjct 254555 CAACGTTTGATCTTTGCCGGCAAGCAGCTAGAAGA-TGGACGCACCTTGTCCGACTACAA 254497 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| ||||| ||||| ||||| ||| |||| Sbjct 254496 CATCCAAAAGGAATCTACTCTCCATTTGGT 254467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756336823520