Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq925 107 4e-18 >seq925 Length=3171676 Score = 107 bits (118), Expect = 4e-18 Identities = 216/317 (68%), Gaps = 9/317 (3%) Strand=Plus/Plus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||| ||||| || |||||||| || |||||||| || || ||||| || || ||| Sbjct 2021482 TTGCATTTGCCGCTGTTGAAGGCATATTCTTTAGCGGCAGTTTTGCATCAATCTTTTGGC 2021541 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | ||||| | ||| | |||| || | || | |||||||||||| || || | |||| Sbjct 2021542 TTAAGAAACGTGGTTTAATGCCGGGCTTAACATTCTCCAATGAGTTGATCTCACGTGACG 2021601 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTT---GATACCC 102095 | ||| | ||| | || || || || || |||| || | |||| | || | || Sbjct 2021602 AGGGTTTACATTGTGATTTCGCGTGTTTGATGTTCCAACA----TTTGATACAGA-AACC 2021656 Query 102096 CATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTC 102155 || | || ||| | ||| ||||||| | ||||||| || ||||||||||||||| Sbjct 2021657 CAGC-AGGGAACGTATTATTGAAATCATATCTGAAGCAGTTAAAATTGAACAAGAATTCT 2021715 Query 102156 TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACA 102215 | |||| | | ||||| || || | || ||||| || | | ||| | || | Sbjct 2021716 TAACAGACGCATTACCTGTAAACCTAATTGGTATGAATTGTAGTCTCATGTCGGATTATA 2021775 Query 102216 TTGAATTTGTGGCAGAT 102232 ||||||| || || ||| Sbjct 2021776 TTGAATTCGTAGCCGAT 2021792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989561101644730