Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1762 488 7e-133 seq925 266 4e-66 >seq1762 Length=809008 Score = 488 bits (540), Expect = 7e-133 Identities = 1242/1873 (66%), Gaps = 34/1873 (2%) Strand=Plus/Minus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||| | |||||||| |||| | | || || || || || | ||| ||||| || Sbjct 695480 TTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCG 695421 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||||| ||| |||| || |||||||| ||| || |||||| ||| | || Sbjct 695420 GTTTTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGGT 695361 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 ||||||| || ||||| | ||||||||||| ||||| ||||| || | || |||||| Sbjct 695360 TCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGCC 695301 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATC 62275 ||||||||| || ||| | ||| ||||||| |||||||| | | ||| || | Sbjct 695300 ATTTTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTA---TG 695244 Query 62276 TTCTGGAAGGTTTGTATTC-------TGAATGGATCCACCATCTACC-ATAATCCTATTC 62327 || ||| ||| | |||| || || || |||| ||| ||||| ||| Sbjct 695243 TTTTGG--GGTATAGATTCAATGTTTTGTATTGAACCACGG-CTAGTGATAATTTGATTT 695187 Query 62328 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACT 62387 || || ||||||| |||||| || || | | | | | ||| |||| || Sbjct 695186 TTCATATCATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACA 695127 Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || || || || || | || | ||||| |||||||| ||| ||||| || | Sbjct 695126 ACCTGAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAA 695067 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 || |||||||| |||| ||||| || ||||| || || ||||| ||||| | | |||| Sbjct 695066 GATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAA 695007 Query 62508 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCC 62567 || | | ||| | | | | ||||| ||||| | | ||||||||| || || Sbjct 695006 GAGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTCCATAGTTCA 694947 Query 62568 GACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACA 62627 | ||| | ||| |||| |||||| || || | || ||| || Sbjct 694946 GTCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTTCA 694887 Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 || || || || || || || ||||| | || || || || ||||| ||||| || Sbjct 694886 TAAGTTTCGTAAGGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCATAG 694827 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 ||||| |||||||| || | | ||| | ||||| ||| || | ||||| Sbjct 694826 TAAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTCGTAAGGATAG 694767 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | ||| || || ||||| ||||| ||||| |||||||||||||| || | ||| || Sbjct 694766 CGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCCTG 694707 Query 62808 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867 |||||| | | ||||| || | ||||| | || ||||| || |||||||| | | Sbjct 694706 AAATTAGATTTCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTAAA 694647 Query 62868 TTTCT-GACAATTACTTTGACCACATCCTTCAG---TTTGAGAAAATCAAATCGCCCATC 62923 || | | || ||| | || ||||| || ||| |||||| || || Sbjct 694646 TTCCGCGTCACGGTCTTAGTG-ACTTCCTTGAGGCGTTT---AAAATCGTATTTTTTGTC 694591 Query 62924 TATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGC 62980 | | |||||||| || | |||| ||||| | ||| || || |||||||| | || Sbjct 694590 TGGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTACCTCGTCAGG 694531 Query 62981 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTG 63040 | | ||| | | || || ||||| | |||||| || || || || || | ||| || Sbjct 694530 TGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATATTCTG 694471 Query 63041 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 63100 ||||||||||||| | ||||| ||||||||||| | || | || || || || || | Sbjct 694470 TTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTCTCCAC 694411 Query 63101 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG-ATTTGTATCTCC 63159 ||| ||||||||||| | ||| | | | | || || | | | ||| | | ||| Sbjct 694410 CTGCGATTCTATAATGGAAAACCAAAGGCTTTGGGCTTTAACTTTCTTATTAGCACGTCC 694351 Query 63160 TTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63219 || || ||| ||| || || || |||||| || || |||||||| | || |||| Sbjct 694350 TT-CTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAACTTCGTGTAATC 694292 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATA 63278 ||||| | || |||||||| || ||||| || | | | ||||| | || |||||| Sbjct 694291 CGGGACACTTATGTGGACACATTAATGACCAATCCTCATT-TGCTTCAACACGCTTCATA 694233 Query 63279 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCT 63338 || | ||||| ||||| | ||| ||||| |||||| | || ||| ||||| ||||| Sbjct 694232 AATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTCGATGCTCCTCTTTTCCG 694173 Query 63339 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63398 ||||| || || | ||| | || | | |||||||| ||||| || ||||||||||| Sbjct 694172 GTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGTATATA 694113 Query 63399 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63458 || | | |||| || ||||| || || ||||| | || | || |||||| || Sbjct 694112 GCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTATTGAAA 694053 Query 63459 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCA 63518 || | ||||||||| | | || |||||| | ||||| || || | || | || Sbjct 694052 ACACGCAACATTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAATCGAAGTGCCT 693993 Query 63519 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 | || || ||| | || || || || || || || |||||| || ||||| Sbjct 693992 TTAGCGCGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAATCAATGCA 693933 Query 63579 CATCGTTTTAACG-TGTCATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAA 63636 ||| | | | || ||| | | ||||| || ||| || |||| ||| ||||| ||||| Sbjct 693932 CATTGATGTGCCGATGT-AAATATGCCATCAATGGAGTCGTCGACCATAGTTAA-TAGAA 693875 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 |||| ||| | ||| | | | || | ||| ||| | || || || || || | Sbjct 693874 AACATGAAGATAATTGTGGCTGTTTGGTAGCGGCAGCAAAGAGTGTTGGTGAGGCATGTG 693815 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 |||| | ||| ||||| | |||||| || || || || | ||||||||| || Sbjct 693814 TAAAGTAACGTTCTGAAAGCAAATTGTATGTGTCGATTGCCGCATCTATATCCTCACCAT 693755 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 | || || | || |||||||||||||| ||||| || | |||||||||||| || | Sbjct 693754 GTATACCAATGGCTACACGCATTAACATATGCTGTGGCCGTTCAACAATTTTACCATTCA 693695 Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63876 || | || ||||| ||| | ||| ||||| || ||||| || || || || | Sbjct 693694 ACTTGAGTAAATAGGAACGTTCAAGAGTCTTAAACCCGAAATAATTATAACCGAAATCAC 693635 Query 63877 GTTCGTAAATAAT 63889 | || |||||||| Sbjct 693634 GATCATAAATAAT 693622 >seq925 Length=3171676 Score = 266 bits (294), Expect = 4e-66 Identities = 487/709 (69%), Gaps = 7/709 (1%) Strand=Plus/Minus Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 ||| | ||| || |||||||| ||||| ||| | ||||||||| || || || Sbjct 2021798 CAAACGATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAG 2021739 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 || || || | || | || | |||||||||||||| || || | | ||| || Sbjct 2021738 GTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGAT 2021679 Query 33530 A--AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCG 33587 ||| ||| | || | | ||| |||| ||||||| ||||||||||| ||| Sbjct 2021678 TTCAATAATACGTTCCCTGC--TGGGTTTCTGTATCAAATGTTGGAACATCAAACACGCG 2021621 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 ||||| || || | ||||||||| | || || || || || || || | || ||| Sbjct 2021620 AAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGC 2021561 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 |||| ||||| || ||||||||||| || || || || ||| |||||| || ||| Sbjct 2021560 ATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCT 2021501 Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGTA-TCCAC 33764 || || || ||||| ||||| | | || ||| | || || | | | | |||| Sbjct 2021500 TCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAAGAAATCCAA 2021441 Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 | |||||||| ||||| || ||| ||||||||| || || ||||| || | | Sbjct 2021440 GCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGCATTGAACAAA 2021381 Query 33825 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884 |||| | ||| || | || |||| ||| || || || || | ||||||||||| || Sbjct 2021380 TAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAG 2021321 Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944 || | ||||| || || || ||||| ||||||||||| | ||||| || | || ||| Sbjct 2021320 TGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACT 2021261 Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 ||| || || |||||| | ||||||||||| || || ||||| ||| |||||||| Sbjct 2021260 TCTTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAG 2021201 Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 34064 || ||||| || | ||||| | |||||| || ||| |||||||| | | Sbjct 2021200 GCTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCGTGCCCAATCATCTAAA 2021141 Query 34065 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 || || |||| ||| || |||||||| |||||||| || || ||||||| Sbjct 2021140 TCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCTTCTGCCT 2021092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629803381867680