Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 488 7e-133
seq925 266 4e-66
>seq1762
Length=809008
Score = 488 bits (540), Expect = 7e-133
Identities = 1242/1873 (66%), Gaps = 34/1873 (2%)
Strand=Plus/Minus
Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096
||||| | |||||||| |||| | | || || || || || | ||| ||||| ||
Sbjct 695480 TTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCG 695421
Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156
||||||| ||| |||| || |||||||| ||| || |||||| ||| | ||
Sbjct 695420 GTTTTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGGT 695361
Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216
||||||| || ||||| | ||||||||||| ||||| ||||| || | || ||||||
Sbjct 695360 TCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGCC 695301
Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATC 62275
||||||||| || ||| | ||| ||||||| |||||||| | | ||| || |
Sbjct 695300 ATTTTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTA---TG 695244
Query 62276 TTCTGGAAGGTTTGTATTC-------TGAATGGATCCACCATCTACC-ATAATCCTATTC 62327
|| ||| ||| | |||| || || || |||| ||| ||||| |||
Sbjct 695243 TTTTGG--GGTATAGATTCAATGTTTTGTATTGAACCACGG-CTAGTGATAATTTGATTT 695187
Query 62328 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACT 62387
|| || ||||||| |||||| || || | | | | | ||| |||| ||
Sbjct 695186 TTCATATCATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACA 695127
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || || || || || | || | ||||| |||||||| ||| ||||| || |
Sbjct 695126 ACCTGAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAA 695067
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
|| |||||||| |||| ||||| || ||||| || || ||||| ||||| | | ||||
Sbjct 695066 GATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAA 695007
Query 62508 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCC 62567
|| | | ||| | | | | ||||| ||||| | | ||||||||| || ||
Sbjct 695006 GAGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTCCATAGTTCA 694947
Query 62568 GACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACA 62627
| ||| | ||| |||| |||||| || || | || ||| ||
Sbjct 694946 GTCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTTCA 694887
Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687
|| || || || || || || ||||| | || || || || ||||| ||||| ||
Sbjct 694886 TAAGTTTCGTAAGGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCATAG 694827
Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747
||||| |||||||| || | | ||| | ||||| ||| || | |||||
Sbjct 694826 TAAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTCGTAAGGATAG 694767
Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807
| ||| || || ||||| ||||| ||||| |||||||||||||| || | ||| ||
Sbjct 694766 CGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCCTG 694707
Query 62808 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867
|||||| | | ||||| || | ||||| | || ||||| || |||||||| | |
Sbjct 694706 AAATTAGATTTCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTAAA 694647
Query 62868 TTTCT-GACAATTACTTTGACCACATCCTTCAG---TTTGAGAAAATCAAATCGCCCATC 62923
|| | | || ||| | || ||||| || ||| |||||| || ||
Sbjct 694646 TTCCGCGTCACGGTCTTAGTG-ACTTCCTTGAGGCGTTT---AAAATCGTATTTTTTGTC 694591
Query 62924 TATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGC 62980
| | |||||||| || | |||| ||||| | ||| || || |||||||| | ||
Sbjct 694590 TGGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTACCTCGTCAGG 694531
Query 62981 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTG 63040
| | ||| | | || || ||||| | |||||| || || || || || | ||| ||
Sbjct 694530 TGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATATTCTG 694471
Query 63041 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 63100
||||||||||||| | ||||| ||||||||||| | || | || || || || || |
Sbjct 694470 TTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTCTCCAC 694411
Query 63101 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG-ATTTGTATCTCC 63159
||| ||||||||||| | ||| | | | | || || | | | ||| | | |||
Sbjct 694410 CTGCGATTCTATAATGGAAAACCAAAGGCTTTGGGCTTTAACTTTCTTATTAGCACGTCC 694351
Query 63160 TTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63219
|| || ||| ||| || || || |||||| || || |||||||| | || ||||
Sbjct 694350 TT-CTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAACTTCGTGTAATC 694292
Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATA 63278
||||| | || |||||||| || ||||| || | | | ||||| | || ||||||
Sbjct 694291 CGGGACACTTATGTGGACACATTAATGACCAATCCTCATT-TGCTTCAACACGCTTCATA 694233
Query 63279 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCT 63338
|| | ||||| ||||| | ||| ||||| |||||| | || ||| ||||| |||||
Sbjct 694232 AATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTCGATGCTCCTCTTTTCCG 694173
Query 63339 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63398
||||| || || | ||| | || | | |||||||| ||||| || |||||||||||
Sbjct 694172 GTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGTATATA 694113
Query 63399 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63458
|| | | |||| || ||||| || || ||||| | || | || |||||| ||
Sbjct 694112 GCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTATTGAAA 694053
Query 63459 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCA 63518
|| | ||||||||| | | || |||||| | ||||| || || | || | ||
Sbjct 694052 ACACGCAACATTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAATCGAAGTGCCT 693993
Query 63519 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578
| || || ||| | || || || || || || || |||||| || |||||
Sbjct 693992 TTAGCGCGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAATCAATGCA 693933
Query 63579 CATCGTTTTAACG-TGTCATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAA 63636
||| | | | || ||| | | ||||| || ||| || |||| ||| ||||| |||||
Sbjct 693932 CATTGATGTGCCGATGT-AAATATGCCATCAATGGAGTCGTCGACCATAGTTAA-TAGAA 693875
Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696
|||| ||| | ||| | | | || | ||| ||| | || || || || || |
Sbjct 693874 AACATGAAGATAATTGTGGCTGTTTGGTAGCGGCAGCAAAGAGTGTTGGTGAGGCATGTG 693815
Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756
|||| | ||| ||||| | |||||| || || || || | ||||||||| ||
Sbjct 693814 TAAAGTAACGTTCTGAAAGCAAATTGTATGTGTCGATTGCCGCATCTATATCCTCACCAT 693755
Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816
| || || | || |||||||||||||| ||||| || | |||||||||||| || |
Sbjct 693754 GTATACCAATGGCTACACGCATTAACATATGCTGTGGCCGTTCAACAATTTTACCATTCA 693695
Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63876
|| | || ||||| ||| | ||| ||||| || ||||| || || || || |
Sbjct 693694 ACTTGAGTAAATAGGAACGTTCAAGAGTCTTAAACCCGAAATAATTATAACCGAAATCAC 693635
Query 63877 GTTCGTAAATAAT 63889
| || ||||||||
Sbjct 693634 GATCATAAATAAT 693622
>seq925
Length=3171676
Score = 266 bits (294), Expect = 4e-66
Identities = 487/709 (69%), Gaps = 7/709 (1%)
Strand=Plus/Minus
Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469
||| | ||| || |||||||| ||||| ||| | ||||||||| || || ||
Sbjct 2021798 CAAACGATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAG 2021739
Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529
|| || || | || | || | |||||||||||||| || || | | ||| ||
Sbjct 2021738 GTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGAT 2021679
Query 33530 A--AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCG 33587
||| ||| | || | | ||| |||| ||||||| ||||||||||| |||
Sbjct 2021678 TTCAATAATACGTTCCCTGC--TGGGTTTCTGTATCAAATGTTGGAACATCAAACACGCG 2021621
Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647
||||| || || | ||||||||| | || || || || || || || | || |||
Sbjct 2021620 AAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGC 2021561
Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707
|||| ||||| || ||||||||||| || || || || ||| |||||| || |||
Sbjct 2021560 ATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCT 2021501
Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGTA-TCCAC 33764
|| || || ||||| ||||| | | || ||| | || || | | | | ||||
Sbjct 2021500 TCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAAGAAATCCAA 2021441
Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824
| |||||||| ||||| || ||| ||||||||| || || ||||| || | |
Sbjct 2021440 GCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGCATTGAACAAA 2021381
Query 33825 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884
|||| | ||| || | || |||| ||| || || || || | ||||||||||| ||
Sbjct 2021380 TAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAG 2021321
Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944
|| | ||||| || || || ||||| ||||||||||| | ||||| || | || |||
Sbjct 2021320 TGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACT 2021261
Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004
||| || || |||||| | ||||||||||| || || ||||| ||| ||||||||
Sbjct 2021260 TCTTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAG 2021201
Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 34064
|| ||||| || | ||||| | |||||| || ||| |||||||| | |
Sbjct 2021200 GCTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCGTGCCCAATCATCTAAA 2021141
Query 34065 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
|| || |||| ||| || |||||||| |||||||| || || |||||||
Sbjct 2021140 TCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCTTCTGCCT 2021092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629803381867680
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