Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 495 3e-135
seq925 289 3e-73
>seq1762
Length=809008
Score = 495 bits (548), Expect = 3e-135
Identities = 1229/1849 (66%), Gaps = 40/1849 (2%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| || ||||||| ||| | ||||| || | ||||| | || ||||||||| || |||
Sbjct 695477 TCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCGGTT 695418
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|||| || | |||| || |||||||| ||| || ||||| |||| |||| |
Sbjct 695417 TTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGGTTCT 695358
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969
||| | ||| | | ||||||||||| || ||||| ||||| | || || ||||||
Sbjct 695357 GCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGCCATT 695298
Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029
| || | |||| || ||||||||||| |||||||| | || ||| || |
Sbjct 695297 TTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTATGTTTTGG 695238
Query 37030 GGTAAATCTA-AATGTT--GAATAGAACCAT---TATGTAACACAATTGTATTCTTTATG 37083
|||| | | |||||| | || |||||| || || | | ||| ||| || ||
Sbjct 695237 GGTATAGATTCAATGTTTTGTATTGAACCACGGCTA-GTGATA--ATTTGATTTTTCATA 695181
Query 37084 TCATTATTCCACATATTTCTACTTATTA-GTTCTCTCAATAGGTGTGGATTTACAACCTG 37142
|||| || ||| | | | | | | || | || | ||| | || | |||||||||||
Sbjct 695180 TCATCATCCCATA-AGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAACCTG 695122
Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202
||| || || || | || | | ||||| |||||| || || || |||| || ||
Sbjct 695121 AAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAGATTC 695062
Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262
|||||||| | |||||| | || || || || ||||| ||||| | ||| | ||
Sbjct 695061 ATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAGAGTT 695002
Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322
| | |||||| | |||||| | | ||| | ||| |||||| ||||| || || ||
Sbjct 695001 GCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTCCATAGTTCAGTCGG 694942
Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382
|| || |||||||||||| |||| ||||||||| || | || ||| | | ||| ||
Sbjct 694941 CTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTTCATAAGT 694882
Query 37383 CTCATAAGGTCCGTAAATTTT--AGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATAT 37440
|| ||||| || ||||||| ||| | |||||| || | ||||| || |||| ||
Sbjct 694881 TTCGTAAGGCCC--AAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCATAGTAA 694824
Query 37441 ATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCC 37500
|||||||| || |||||| ||| |||| ||||| |||||| ||| | | ||||| |
Sbjct 694823 ATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTCGTAAGGATAGCGC 694764
Query 37501 AATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTA 37560
| | || || | || || ||||| || ||||| ||||| || || | ||| | |
Sbjct 694763 ATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCCTGAAA 694704
Query 37561 TTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTT 37620
|||||| | | ||| || |||||| | || ||||| || |||||||||| |||
Sbjct 694703 TTAGATTTCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTAAATTC 694644
Query 37621 TTAACTAGT-ATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTATT--- 37676
| || | || || | | | || |||| | |||| ||| || ||
Sbjct 694643 ----CGCGTCACGGTCTTAGTGACT-TC--CTTGAGGCGTTTAAAATCGTATTTTTTGTC 694591
Query 37677 ------AACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTC 37730
|||||| || | | | ||| ||| ||| ||| |||||||| || || ||
Sbjct 694590 TGGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTACCTCGTCA-- 694533
Query 37731 GTTACTAAATTGT--ATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTG 37788
| | || ||| | | ||| ||||| || | |||||| || ||||||| || | |||
Sbjct 694532 GGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATATTC 694473
Query 37789 CTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCT 37848
|||||| ||| ||||||||| ||| ||||||| |||||||| || || ||
Sbjct 694472 TGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTCTCC 694413
Query 37849 ATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA--Attt 37906
| || | || ||||| || ||| | ||| |||||||| || ||| | |
Sbjct 694412 ACCTGCGATTCTATAATGGAAAACCAAAGGCTTTGGGCTTTAACTTTCTTATTAGCACGT 694353
Query 37907 ttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATA 37966
||||| ||| |||| | | ||||| || | || || | ||||| || ||| ||
Sbjct 694352 CCTTCTTG--TTCATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAACTTCGTGTA 694295
Query 37967 ATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCA 38026
|||| ||||| | ||||||||||| ||||| || |||| | ||| || || | ||
Sbjct 694294 ATCCGGGACACTTATGTGGACACATTAATGACCAATCCTCATTTGCTTCAACACGCTTCA 694235
Query 38027 TAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCC 38086
||||||| ||||||| ||| || ||| |||||||||| | | || || || || || |
Sbjct 694234 TAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTCGATGCTCCTCTTTTC 694175
Query 38087 CTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAA 38146
| ||| || |||| | ||| || || |||||||||||||| || || | || |
Sbjct 694174 CGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGTATA 694115
Query 38147 TCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTAT 38206
| | | |||||||||| |||| | || || |||| | ||| | || ||||||
Sbjct 694114 TAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTATTGA 694055
Query 38207 ATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTAC 38266
| | | ||||| ||||| | ||||| ||| |||| || | || | || |||| |
Sbjct 694054 AAACACGCAACATTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAATCGAAGTGC 693995
Query 38267 CCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAG 38326
| ||||| |||||| | | || || || ||||| ||| ||| || || || |
Sbjct 693994 CTTTAGCGCGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAATCAATG 693935
Query 38327 CGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAA 38386
| ||||| | | || |||||| || || || ||| || || | || || ||
Sbjct 693934 CACATTGATGTGCCGATGTAAATATGCCATCAATGGAGTCGTCGACCATAGTTAATAGAA 693875
Query 38387 AACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTA 38446
|||| ||| | ||| ||| | || |||| ||| | ||| || || ||||||
Sbjct 693874 AACATGAAGATAATTGTGGCTGTTTGGTAGCGGCAGCAAAGAGTGTTGGTGAGGCATGTG 693815
Query 38447 TGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGT 38506
| || | ||| || | |||| ||||| || ||| | |||||||||| | || |
Sbjct 693814 TAAAGTAACGTTCTGAAAGCAAATTGTATGTGTCGATTGCCGCATCTATATCCTCACCAT 693755
Query 38507 GAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCT 38566
| ||||| | | ||| | ||||| |||||| ||||| | ||| | |||||| ||||
Sbjct 693754 GTATACCAATGGCTACACGCATTAACATATGCTGTGGCCGTTCAACAATTTTACCATTCA 693695
Query 38567 GTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615
|| |||| ||| || ||| | || || | || |||||| ||||
Sbjct 693694 ACTTGAGTAAATAGGAACGTTCAAGAGTCTTAAACCCGAAATAATTATA 693646
>seq925
Length=3171676
Score = 289 bits (320), Expect = 3e-73
Identities = 483/692 (70%), Gaps = 11/692 (2%)
Strand=Plus/Minus
Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523
||| || |||||||| ||||| | ||||| | || |||||||||||| || || | ||
Sbjct 2021792 ATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAGGTTTAC 2021733
Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA---ATGATTATCGA 11580
|| | || |||| || || || | ||| || ||||| || ||| |||||| || |
Sbjct 2021732 AGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGATT-TCAA 2021674
Query 11581 CGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATC 11640
| ||| |||| | ||| |||| ||||||| ||||| |||||||| |||||
Sbjct 2021673 --TAATACGTTCCCTGCTGGGTTTCTGTATCAAATGTTGGAACATCAAACACGCGAAATC 2021616
Query 11641 ACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAA 11700
|||||||||||| ||||| | || | ||||| || |||||||| || ||||| ||
Sbjct 2021615 ACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCATTAA 2021556
Query 11701 TCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCAC 11760
|| ||||| || | |||||| || | ||||| || ||||||||| || || ||
Sbjct 2021555 ACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCTTCAAC 2021496
Query 11761 AGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTTGCTAGATATCCATTTTCT 11817
||| |||||||| | || | ||| ||| | | | || ||| |||||
Sbjct 2021495 AGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAAGAAATCCAAGCCAG 2021436
Query 11818 GGCCCAATCAGCTTTCTTTTTTAC-GCATTCCATTGTTTCTATAGCGTTAAATAAATGCA 11876
||||||||||| || || || ||| | || || || || || || || ||||
Sbjct 2021435 CGCCCAATCAGCCTTACGCTTAACAGCAGGC-ATCGTCTCAATTGCATTGAACAAATAGT 2021377
Query 11877 TTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAA 11936
| ||| | | || | | |||||| || ||||||| |||||||||||||| || |
Sbjct 2021376 CTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAGTGCA 2021317
Query 11937 TATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCA 11996
|||||||||||| |||||||| || |||||||| || ||||| | || || ||
Sbjct 2021316 CATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACTTCTT 2021257
Query 11997 CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTA 12056
| || | ||| | ||||| ||||||||||||||||| | |||||||| ||||
Sbjct 2021256 GACTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGGCTA 2021197
Query 12057 GTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTT 12116
|| || | ||| | | |||||| | ||| | | |||||||||||||||| |
Sbjct 2021196 ATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCGTGCCCAATCATCTAAATCCT 2021137
Query 12117 TTGATAAATCTACTTCTTCAACGGTCCAAAAA 12148
| ||||||||||| ||||| ||||||||||||
Sbjct 2021136 TGGATAAATCTACCTCTTCCACGGTCCAAAAA 2021105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468514223052640
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