Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1762 495 3e-135 seq925 289 3e-73 >seq1762 Length=809008 Score = 495 bits (548), Expect = 3e-135 Identities = 1229/1849 (66%), Gaps = 40/1849 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||||| ||| | ||||| || | ||||| | || ||||||||| || ||| Sbjct 695477 TCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCGGTT 695418 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| || | |||| || |||||||| ||| || ||||| |||| |||| | Sbjct 695417 TTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGGTTCT 695358 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| | ||| | | ||||||||||| || ||||| ||||| | || || |||||| Sbjct 695357 GCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGCCATT 695298 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | || | |||| || ||||||||||| |||||||| | || ||| || | Sbjct 695297 TTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTATGTTTTGG 695238 Query 37030 GGTAAATCTA-AATGTT--GAATAGAACCAT---TATGTAACACAATTGTATTCTTTATG 37083 |||| | | |||||| | || |||||| || || | | ||| ||| || || Sbjct 695237 GGTATAGATTCAATGTTTTGTATTGAACCACGGCTA-GTGATA--ATTTGATTTTTCATA 695181 Query 37084 TCATTATTCCACATATTTCTACTTATTA-GTTCTCTCAATAGGTGTGGATTTACAACCTG 37142 |||| || ||| | | | | | | || | || | ||| | || | ||||||||||| Sbjct 695180 TCATCATCCCATA-AGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAACCTG 695122 Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 ||| || || || | || | | ||||| |||||| || || || |||| || || Sbjct 695121 AAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAGATTC 695062 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 |||||||| | |||||| | || || || || ||||| ||||| | ||| | || Sbjct 695061 ATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAGAGTT 695002 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 | | |||||| | |||||| | | ||| | ||| |||||| ||||| || || || Sbjct 695001 GCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTCCATAGTTCAGTCGG 694942 Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 || || |||||||||||| |||| ||||||||| || | || ||| | | ||| || Sbjct 694941 CTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTTCATAAGT 694882 Query 37383 CTCATAAGGTCCGTAAATTTT--AGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATAT 37440 || ||||| || ||||||| ||| | |||||| || | ||||| || |||| || Sbjct 694881 TTCGTAAGGCCC--AAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCATAGTAA 694824 Query 37441 ATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCC 37500 |||||||| || |||||| ||| |||| ||||| |||||| ||| | | ||||| | Sbjct 694823 ATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTCGTAAGGATAGCGC 694764 Query 37501 AATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTA 37560 | | || || | || || ||||| || ||||| ||||| || || | ||| | | Sbjct 694763 ATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCCTGAAA 694704 Query 37561 TTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTT 37620 |||||| | | ||| || |||||| | || ||||| || |||||||||| ||| Sbjct 694703 TTAGATTTCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTAAATTC 694644 Query 37621 TTAACTAGT-ATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTATT--- 37676 | || | || || | | | || |||| | |||| ||| || || Sbjct 694643 ----CGCGTCACGGTCTTAGTGACT-TC--CTTGAGGCGTTTAAAATCGTATTTTTTGTC 694591 Query 37677 ------AACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTC 37730 |||||| || | | | ||| ||| ||| ||| |||||||| || || || Sbjct 694590 TGGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTACCTCGTCA-- 694533 Query 37731 GTTACTAAATTGT--ATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTG 37788 | | || ||| | | ||| ||||| || | |||||| || ||||||| || | ||| Sbjct 694532 GGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATATTC 694473 Query 37789 CTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCT 37848 |||||| ||| ||||||||| ||| ||||||| |||||||| || || || Sbjct 694472 TGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTCTCC 694413 Query 37849 ATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA--Attt 37906 | || | || ||||| || ||| | ||| |||||||| || ||| | | Sbjct 694412 ACCTGCGATTCTATAATGGAAAACCAAAGGCTTTGGGCTTTAACTTTCTTATTAGCACGT 694353 Query 37907 ttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATA 37966 ||||| ||| |||| | | ||||| || | || || | ||||| || ||| || Sbjct 694352 CCTTCTTG--TTCATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAACTTCGTGTA 694295 Query 37967 ATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCA 38026 |||| ||||| | ||||||||||| ||||| || |||| | ||| || || | || Sbjct 694294 ATCCGGGACACTTATGTGGACACATTAATGACCAATCCTCATTTGCTTCAACACGCTTCA 694235 Query 38027 TAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCC 38086 ||||||| ||||||| ||| || ||| |||||||||| | | || || || || || | Sbjct 694234 TAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTCGATGCTCCTCTTTTC 694175 Query 38087 CTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAA 38146 | ||| || |||| | ||| || || |||||||||||||| || || | || | Sbjct 694174 CGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGTATA 694115 Query 38147 TCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTAT 38206 | | | |||||||||| |||| | || || |||| | ||| | || |||||| Sbjct 694114 TAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTATTGA 694055 Query 38207 ATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTAC 38266 | | | ||||| ||||| | ||||| ||| |||| || | || | || |||| | Sbjct 694054 AAACACGCAACATTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAATCGAAGTGC 693995 Query 38267 CCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAG 38326 | ||||| |||||| | | || || || ||||| ||| ||| || || || | Sbjct 693994 CTTTAGCGCGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAATCAATG 693935 Query 38327 CGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAA 38386 | ||||| | | || |||||| || || || ||| || || | || || || Sbjct 693934 CACATTGATGTGCCGATGTAAATATGCCATCAATGGAGTCGTCGACCATAGTTAATAGAA 693875 Query 38387 AACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTA 38446 |||| ||| | ||| ||| | || |||| ||| | ||| || || |||||| Sbjct 693874 AACATGAAGATAATTGTGGCTGTTTGGTAGCGGCAGCAAAGAGTGTTGGTGAGGCATGTG 693815 Query 38447 TGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGT 38506 | || | ||| || | |||| ||||| || ||| | |||||||||| | || | Sbjct 693814 TAAAGTAACGTTCTGAAAGCAAATTGTATGTGTCGATTGCCGCATCTATATCCTCACCAT 693755 Query 38507 GAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCT 38566 | ||||| | | ||| | ||||| |||||| ||||| | ||| | |||||| |||| Sbjct 693754 GTATACCAATGGCTACACGCATTAACATATGCTGTGGCCGTTCAACAATTTTACCATTCA 693695 Query 38567 GTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615 || |||| ||| || ||| | || || | || |||||| |||| Sbjct 693694 ACTTGAGTAAATAGGAACGTTCAAGAGTCTTAAACCCGAAATAATTATA 693646 >seq925 Length=3171676 Score = 289 bits (320), Expect = 3e-73 Identities = 483/692 (70%), Gaps = 11/692 (2%) Strand=Plus/Minus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || |||||||| ||||| | ||||| | || |||||||||||| || || | || Sbjct 2021792 ATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAGGTTTAC 2021733 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA---ATGATTATCGA 11580 || | || |||| || || || | ||| || ||||| || ||| |||||| || | Sbjct 2021732 AGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGATT-TCAA 2021674 Query 11581 CGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATC 11640 | ||| |||| | ||| |||| ||||||| ||||| |||||||| ||||| Sbjct 2021673 --TAATACGTTCCCTGCTGGGTTTCTGTATCAAATGTTGGAACATCAAACACGCGAAATC 2021616 Query 11641 ACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAA 11700 |||||||||||| ||||| | || | ||||| || |||||||| || ||||| || Sbjct 2021615 ACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCATTAA 2021556 Query 11701 TCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCAC 11760 || ||||| || | |||||| || | ||||| || ||||||||| || || || Sbjct 2021555 ACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCTTCAAC 2021496 Query 11761 AGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTTGCTAGATATCCATTTTCT 11817 ||| |||||||| | || | ||| ||| | | | || ||| ||||| Sbjct 2021495 AGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAAGAAATCCAAGCCAG 2021436 Query 11818 GGCCCAATCAGCTTTCTTTTTTAC-GCATTCCATTGTTTCTATAGCGTTAAATAAATGCA 11876 ||||||||||| || || || ||| | || || || || || || || |||| Sbjct 2021435 CGCCCAATCAGCCTTACGCTTAACAGCAGGC-ATCGTCTCAATTGCATTGAACAAATAGT 2021377 Query 11877 TTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAA 11936 | ||| | | || | | |||||| || ||||||| |||||||||||||| || | Sbjct 2021376 CTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAGTGCA 2021317 Query 11937 TATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCA 11996 |||||||||||| |||||||| || |||||||| || ||||| | || || || Sbjct 2021316 CATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACTTCTT 2021257 Query 11997 CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTA 12056 | || | ||| | ||||| ||||||||||||||||| | |||||||| |||| Sbjct 2021256 GACTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGGCTA 2021197 Query 12057 GTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTT 12116 || || | ||| | | |||||| | ||| | | |||||||||||||||| | Sbjct 2021196 ATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCGTGCCCAATCATCTAAATCCT 2021137 Query 12117 TTGATAAATCTACTTCTTCAACGGTCCAAAAA 12148 | ||||||||||| ||||| |||||||||||| Sbjct 2021136 TGGATAAATCTACCTCTTCCACGGTCCAAAAA 2021105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468514223052640