Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1762 482 3e-131 seq925 289 4e-73 >seq1762 Length=809008 Score = 482 bits (534), Expect = 3e-131 Identities = 1241/1880 (66%), Gaps = 30/1880 (2%) Strand=Plus/Minus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||| | |||||||| |||| | | || || || || || | ||| ||||| || Sbjct 695480 TTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCG 695421 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||||| ||| |||| || |||||||| ||| || |||||| ||| | || Sbjct 695420 GTTTTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGGT 695361 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 ||||||| || ||||| | ||||||||||| ||||| ||||| || | || |||||| Sbjct 695360 TCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGCC 695301 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATC 65068 ||||||||| || ||| | ||| ||||||| |||||||| | | ||| || | Sbjct 695300 ATTTTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTA---TG 695244 Query 65069 TTCTGGAAGGTTTGTATTC-------TGAATGGATCCACCATCTGCCATAATCCTATTCT 65121 || ||| ||| | |||| || || || |||| | ||||| ||| | Sbjct 695243 TTTTGG--GGTATAGATTCAATGTTTTGTATTGAACCACGGCTAGTGATAATTTGATTTT 695186 Query 65122 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 65181 | || ||||||| |||||| || || | | | | | ||| | || || | Sbjct 695185 TCATATCATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAA 695126 Query 65182 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAG 65241 | ||||| || || || | || | ||||| |||||||| ||| ||||| || | || Sbjct 695125 CCTGAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAG 695066 Query 65242 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAAC 65301 | |||||||| |||| ||||| || ||||| || || ||||| ||||| | | |||| Sbjct 695065 ATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAG 695006 Query 65302 TATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 65361 || | | ||| | | | | ||||| ||||| | ||||||||| || || | Sbjct 695005 AGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTCCATAGTTCAG 694946 Query 65362 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 65421 ||| |||| |||||| || || | || ||| ||| Sbjct 694945 TCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTTCAT 694886 Query 65422 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 65481 | || ||||| || || || ||||| | ||| || || || ||||| ||||| || | Sbjct 694885 AAGTTTCGTAAGGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCATAGT 694826 Query 65482 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 65541 |||| ||||| || || | | ||| | ||||| ||| || | ||||| Sbjct 694825 AAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTCGTAAGGATAGC 694766 Query 65542 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 65601 | ||| || || ||||||||||| ||||| |||||||||||||| || | ||| || Sbjct 694765 GCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCCTGA 694706 Query 65602 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 65661 |||||| | | ||||| || | ||||| | || ||||| || |||||||| | || Sbjct 694705 AATTAGATTTCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTAAAT 694646 Query 65662 TTCT-GACAATTACTTTGACCACATCCTTCAG---TTTGAGAAAATCAAATCGCTCATCT 65717 | | | || ||| | || ||||| || ||| |||||| || | ||| Sbjct 694645 TCCGCGTCACGGTCTTAGTG-ACTTCCTTGAGGCGTTT---AAAATCGTATTTTTTGTCT 694590 Query 65718 ATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 65774 | |||||||| || | |||| ||||| | ||| || || |||||||| | || Sbjct 694589 GGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTACCTCGTCAGGT 694530 Query 65775 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 65834 | | ||| | | || || ||||| | |||||| || || || || || | ||| ||| Sbjct 694529 GCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATATTCTGT 694470 Query 65835 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 65894 |||||||||||| | ||||| ||||||||||| | || | || || || || || | | Sbjct 694469 TGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTCTCCACC 694410 Query 65895 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG-ATTTGTATCTCTT 65953 || ||||||||||| | ||| | | | | || || | | | ||| | | || | Sbjct 694409 TGCGATTCTATAATGGAAAACCAAAGGCTTTGGGCTTTAACTTTCTTATTAGCACGTCCT 694350 Query 65954 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013 | || ||| ||| ||| || || |||||| || || |||||||| | || ||||| Sbjct 694349 T-CTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAACTTCGTGTAATCC 694291 Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAA 66072 ||||| | || |||||||| || ||||| || | | | ||||| | || ||||||| Sbjct 694290 GGGACACTTATGTGGACACATTAATGACCAATCCTCATT-TGCTTCAACACGCTTCATAA 694232 Query 66073 AGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTG 66132 | | ||||| ||||| | ||| |||||||||||| | || ||| ||||| ||||| | Sbjct 694231 ATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTCGATGCTCCTCTTTTCCGG 694172 Query 66133 TATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGG 66192 |||| || || | ||| | || | | ||||||| ||||| || ||||||||||| | Sbjct 694171 TATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGTATATAG 694112 Query 66193 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 66252 | | | |||| || ||||| || || ||||| | || | || |||||| ||| Sbjct 694111 CAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTATTGAAAA 694052 Query 66253 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 66312 | | ||||||||| | | ||||| ||||| ||||| || || | || | | || Sbjct 694051 CACGCAACATTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAATCGAAGTGCCTT 693992 Query 66313 TTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 66372 | || || ||| | || || || || || || || |||||| || ||||| | Sbjct 693991 TAGCGCGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAATCAATGCAC 693932 Query 66373 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAA 66431 || | | | || | | ||||| || || || || | ||| ||||| ||||||| Sbjct 693931 ATTGATGTGCCGATGTAAATATGCCATCAATGGAGTCGTCGACCATAGTTAA-TAGAAAA 693873 Query 66432 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 66491 || ||| | ||| | | | || | ||| ||| | || || || || || ||| Sbjct 693872 CATGAAGATAATTGTGGCTGTTTGGTAGCGGCAGCAAAGAGTGTTGGTGAGGCATGTGTA 693813 Query 66492 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 66551 || | ||| ||||| | |||||| || || || || | ||||||||| ||| Sbjct 693812 AAGTAACGTTCTGAAAGCAAATTGTATGTGTCGATTGCCGCATCTATATCCTCACCATGT 693753 Query 66552 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 66611 || || | || |||||||||||||| ||||| || | |||||| || || || | Sbjct 693752 ATACCAATGGCTACACGCATTAACATATGCTGTGGCCGTTCAACAATTTTACCATTCAAC 693693 Query 66612 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 66671 || | || ||||| ||| | ||| ||||| || ||||| || || || || || Sbjct 693692 TTGAGTAAATAGGAACGTTCAAGAGTCTTAAACCCGAAATAATTATAACCGAAATCACGA 693633 Query 66672 TCGTAAATAATAACCGAGTT 66691 || |||||||| | ||||| Sbjct 693632 TCATAAATAATTGCAGAGTT 693613 >seq925 Length=3171676 Score = 289 bits (320), Expect = 4e-73 Identities = 468/667 (70%), Gaps = 7/667 (1%) Strand=Plus/Minus Query 36028 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 36087 ||||||||| || || || || || || | || | || | |||||||||||||| Sbjct 2021756 ACAATTCATACCAATTAGGTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTT 2021697 Query 36088 GACCGCGTCTGTTATAATAG--ATATTACTGTTTCTTCACTCGGTGGATACAATAAATGT 36145 || || || | ||| || ||| ||| ||| | | || ||| | | |||||| Sbjct 2021696 AACTGCTTCAGATATGATTTCAATAATAC-GTTCCCTG-CTGGGTTTCTGTATCAAATGT 2021639 Query 36146 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 36205 | ||||||||||| |||||||| || |||| ||||||||| | || || || ||| Sbjct 2021638 TGGAACATCAAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTG 2021579 Query 36206 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 36265 || || || | || ||||||| ||||| || ||||||||||| || || ||||| Sbjct 2021578 GAGAATGTTAAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTG 2021519 Query 36266 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 36325 || |||||| || ||||| || || ||||| ||||| | | || ||| | ||| Sbjct 2021518 CCGCTAAAGAATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCA 2021459 Query 36326 --CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 36382 || | | | | |||| | |||||||| ||||| || ||| |||||| ||| Sbjct 2021458 GACTTTGAAGAAATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTC 2021399 Query 36383 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 36442 || || ||||| || | ||||| | ||| || | || |||| |||||| ||||| || Sbjct 2021398 TCAATTGCATTGAACAAATAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAAT 2021339 Query 36443 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 36502 | ||||||||||| || || | ||||| || || |||||||| ||||||||||| | Sbjct 2021338 ATGCTATACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGC 2021279 Query 36503 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 36562 ||||| || | || |||||| || || |||||| | ||||||||||| || || || Sbjct 2021278 GCCTCCGTTACTTGAACTTCTTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCA 2021219 Query 36563 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGT 36622 || ||| |||||||| || ||||| || | ||||| | ||||||| || ||| Sbjct 2021218 TCCGAGGCGGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGT 2021159 Query 36623 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 36682 |||||||| | ||| || |||| ||| || |||||||| |||||||| || || Sbjct 2021158 CGTGCCCAATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCT 2021099 Query 36683 TCTGCCT 36689 ||||||| Sbjct 2021098 TCTGCCT 2021092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658157941749040