Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq454 114 1e-20
seq1310 113 4e-20
>seq454
Length=983520
Score = 114 bits (126), Expect = 1e-20
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || |||||||| || || || | ||||| || ||||| ||||| || |||
Sbjct 254448 GCCACCACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 254507
Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655
|| |||| || | ||||| ||||| || || ||| |||||| |||||| ||||| ||||
Sbjct 254508 CAAGGTGCGTCCA-TCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAG 254566
Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
| || ||||| ||||| ||| || || | | || | || || | || || |
Sbjct 254567 GAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAA 254626
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| | || | || ||||||||||| || || ||||| |||||||||
Sbjct 254627 CCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCATA 254676
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || |||||||| || || |||| |||||||| ||||| ||||| || || |
Sbjct 254677 CCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 254736
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| |||||| || ||||| || ||| | |||| |||||| ||||| || ||
Sbjct 254737 AAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGA 254796
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||| || || ||| || || | | || | || || | || || |||
Sbjct 254797 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGACC 254856
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| | || | || ||||||||||| || || ||||| |||||||||
Sbjct 254857 TCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCATA 254904
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 139571 GACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGC 139629
|| |||||||| ||||| || || || |||| || | ||||| | ||| || || ||
Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAACTGCTTGCCGGC 254312
Query 139630 ATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAG 139689
| |||||| |||||| ||||| || || || ||||| ||||| |||||| || |
Sbjct 254313 AAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCAC 254372
Query 139690 CTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTT 139749
| || | || || | ||||| || || | ||| | || ||||||||||| |||||
Sbjct 254373 ATTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTT 254432
Query 139750 TACGAATATTTGCAT 139764
||||| ||||||||
Sbjct 254433 AACGAAAATTTGCAT 254447
>seq1310
Length=3030561
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | |||||| || ||||||| || ||||| ||||| || || |||||| |
Sbjct 645207 CCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGAC 645148
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||||| | ||||| || || |||||| |||||| ||||| || ||
Sbjct 645147 AAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 645088
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||||||||| |||||| ||| | | ||| | ||||| | ||||| |||
Sbjct 645087 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACC 645028
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | || | ||||| || |||| ||||| || || || |||||
Sbjct 645027 TCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496052801355200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |