Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1762 549 3e-151 seq925 273 3e-68 >seq1762 Length=809008 Score = 549 bits (608), Expect = 3e-151 Identities = 1262/1886 (67%), Gaps = 42/1886 (2%) Strand=Plus/Minus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||| | |||||||| |||| | | || || || || || | ||| ||||| || Sbjct 695480 TTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCG 695421 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||||| ||| |||| || || ||||| ||| || |||||| ||| | || Sbjct 695420 GTTTTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGGT 695361 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 ||||||| || ||||| | ||||||||||| ||||| ||||| || | || |||||| Sbjct 695360 TCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGCC 695301 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATC 78947 ||||||||| || ||| | ||| ||||||| |||||||| | | ||| || | Sbjct 695300 ATTTTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTA---TG 695244 Query 78948 TTCTGGAAGGTTTGTATTC-------TGAATGGATCCACCATCTGCCATAATCCTATTCT 79000 || ||| ||| | |||| || || || |||| | ||||| ||| | Sbjct 695243 TTTTGG--GGTATAGATTCAATGTTTTGTATTGAACCACGGCTAGTGATAATTTGATTTT 695186 Query 79001 TGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 79060 | || || |||| |||||| || || | | | | | ||| | || || | Sbjct 695185 TCATATCATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAA 695126 Query 79061 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCG 79120 | ||||| || || || | || | ||||| |||||||| ||| || || || | | Sbjct 695125 CCTGAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAG 695066 Query 79121 ATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAAC 79180 |||||||||| |||| ||||| || ||||| || |||||||| ||||| | | |||| Sbjct 695065 ATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAG 695006 Query 79181 TATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTC---CCAATCCCAAAGAT 79237 || | | ||| | | | ||||| ||||| | | || ||||| ||| || | Sbjct 695005 AGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCA---ACTCAGTCCAATTCCATAGTT 694949 Query 79238 CAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTG 79297 ||| ||| || ||| | |||||| |||| |||||| || ||| | ||| ||| Sbjct 694948 CAGTCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTT 694889 Query 79298 TGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGT 79357 || ||||| ||||| || ||||| || ||||| || || || ||||| || || | Sbjct 694888 CATAAGTTTCGTAAGGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCAT 694829 Query 79358 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGAT 79417 | ||||| ||||| || || | | ||| | ||||| | ||| || | |||| Sbjct 694828 AGTAAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTCGTAAGGAT 694769 Query 79418 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 79477 | | ||| || || ||||||||||| ||||| |||||||||||||| || | ||| | Sbjct 694768 AGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCC 694709 Query 79478 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 79537 | |||||| | | ||||| || | ||||| | || ||||| || |||||||| | Sbjct 694708 TGAAATTAGATTTCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTA 694649 Query 79538 GATTCC---TGACTATTACTTTGACCACATCCTTTAG---TTTGAGAAAATCAAATCGTC 79591 ||||| | || | ||| | || ||||| || ||| |||||| || | Sbjct 694648 AATTCCGCGTCACGGT--CTTAGTG-ACTTCCTTGAGGCGTTT---AAAATCGTATTTTT 694595 Query 79592 CATCTATT---ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT 79648 ||| | |||||||| || | || | ||||| | ||| || || |||||||| | Sbjct 694594 TGTCTGGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTACCTCGT 694535 Query 79649 TAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAAT 79708 || | | ||| | | ||||| ||||| | ||||| || ||||| || || | || Sbjct 694534 CAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATAT 694475 Query 79709 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTT 79768 | ||||||||||||||| | ||||| ||||||||||| | || |||| || || || | Sbjct 694474 TCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTCT 694415 Query 79769 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGT-AT 79827 | | ||| ||||||||||| | ||| | | | | || || | | | ||| | | Sbjct 694414 CCACCTGCGATTCTATAATGGAAAACCAAAGGCTTTGGGCTTTAACTTT---CTTATTAG 694358 Query 79828 CTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGT 79885 | | | |||| ||| |||| ||| ||||| |||||| || || |||||||| |||| Sbjct 694357 CACGTCCTTCTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAACTTCGT 694298 Query 79886 CTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTT 79945 |||||| ||||| | | |||||||| || ||||| || ||| | | || || | Sbjct 694297 GTAATCCGGGACACTTATGTGGACACATTAATGACCAATCCTCATTTGCTTCAACACGCT 694238 Query 79946 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 80005 ||||||| | ||||| ||||| | ||| ||||| |||||| | || ||||||||| | Sbjct 694237 TCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTCGATGCTCCTCTT 694178 Query 80006 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 80065 |||| ||||| || || | ||| | || | | |||||||| ||||| || ||||||| Sbjct 694177 TTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGT 694118 Query 80066 ATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 80125 |||| || | | |||| |||||||| || || ||||| | || | || ||||| Sbjct 694117 ATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTAT 694058 Query 80126 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGC 80185 | |||| | ||||||||| | | ||||| ||||| ||||| || || | || | Sbjct 694057 TGAAAACACGCAACATTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAATCGAAG 693998 Query 80186 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 80245 | || | || || ||| | || || || || || || || |||||| || | Sbjct 693997 TGCCTTTAGCGCGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAATCA 693938 Query 80246 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT-GTTAAGT 80304 |||| ||| | | | || | | ||||| || ||| || || | ||| ||||| | Sbjct 693937 ATGCACATTGATGTGCCGATGTAAATATGCCATCAATGGAGTCGTCGACCATAGTTAA-T 693879 Query 80305 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 80364 |||||||| ||| | ||| | | | || | ||| ||| | || || || || Sbjct 693878 AGAAAACATGAAGATAATTGTGGCTGTTTGGTAGCGGCAGCAAAGAGTGTTGGTGAGGCA 693819 Query 80365 TGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCAT 80424 || ||||| | ||| || || | |||||| || || || || | ||||||||| Sbjct 693818 TGTGTAAAGTAACGTTCTGAAAGCAAATTGTATGTGTCGATTGCCGCATCTATATCCTCA 693759 Query 80425 TGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTA 80484 ||| || || | || |||||||||||||| ||||| || | |||||| || || | Sbjct 693758 CCATGTATACCAATGGCTACACGCATTAACATATGCTGTGGCCGTTCAACAATTTTACCA 693699 Query 80485 TTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 80544 || | || | || || || ||| | ||| ||||| || ||||| || || || Sbjct 693698 TTCAACTTGAGTAAATAGGAACGTTCAAGAGTCTTAAACCCGAAATAATTATAACCGAAA 693639 Query 80545 TCTCGTTCGTAAATAATAACCGAGTT 80570 || || || |||||||| | ||||| Sbjct 693638 TCACGATCATAAATAATTGCAGAGTT 693613 >seq925 Length=3171676 Score = 273 bits (302), Expect = 3e-68 Identities = 461/665 (69%), Gaps = 3/665 (0%) Strand=Plus/Minus Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889 ||||||||| || || || || || || | || | || | |||||||||||||| Sbjct 2021756 ACAATTCATACCAATTAGGTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTT 2021697 Query 49890 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTT 49949 || || || | ||| || ||| ||| || ||| || | ||||||| Sbjct 2021696 AACTGCTTCAGATATGATTTCAATAATACGTTCCCTGCTGGGTTTCTGTATCAAATGTTG 2021637 Query 49950 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 50009 ||||||||||| |||||||| || || | ||||||||| | || | || ||||| Sbjct 2021636 GAACATCAAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGA 2021577 Query 50010 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCC 50069 || || | || ||||||| ||||| || ||||||||||| || || ||||| || Sbjct 2021576 GAATGTTAAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCC 2021517 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG-- 50127 |||||| || ||||| || |||||||| |||| | | || ||| | | || Sbjct 2021516 GCTAAAGAATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGA 2021457 Query 50128 CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 50186 || | | | | |||| | |||||||| ||||| || ||| ||||||||| || Sbjct 2021456 CTTTGAAGAAATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTC 2021397 Query 50187 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 50246 || ||||| || | ||||| | ||| || | || |||| ||| || || || || | Sbjct 2021396 AATTGCATTGAACAAATAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATAT 2021337 Query 50247 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 50306 ||||||||||| || || | ||||| || || || ||||| ||||||||||| | || Sbjct 2021336 GCTATACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGC 2021277 Query 50307 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTC 50366 ||| || | || |||||| || || ||||| | ||||||||||| || || || || Sbjct 2021276 CTCCGTTACTTGAACTTCTTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCATC 2021217 Query 50367 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTT 50426 ||| |||||||| || ||||| || | ||||||| |||||||| || ||| Sbjct 2021216 CGAGGCGGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCG 2021157 Query 50427 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 50486 |||||||| | ||| || |||| |||||| |||||||| |||||||| || || || Sbjct 2021156 TGCCCAATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCTTC 2021097 Query 50487 TGCCT 50491 ||||| Sbjct 2021096 TGCCT 2021092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718252585081840