Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 549 3e-151
seq925 273 3e-68
>seq1762
Length=809008
Score = 549 bits (608), Expect = 3e-151
Identities = 1262/1886 (67%), Gaps = 42/1886 (2%)
Strand=Plus/Minus
Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768
||||| | |||||||| |||| | | || || || || || | ||| ||||| ||
Sbjct 695480 TTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCG 695421
Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828
||||||| ||| |||| || || ||||| ||| || |||||| ||| | ||
Sbjct 695420 GTTTTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGGT 695361
Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888
||||||| || ||||| | ||||||||||| ||||| ||||| || | || ||||||
Sbjct 695360 TCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGCC 695301
Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATC 78947
||||||||| || ||| | ||| ||||||| |||||||| | | ||| || |
Sbjct 695300 ATTTTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTA---TG 695244
Query 78948 TTCTGGAAGGTTTGTATTC-------TGAATGGATCCACCATCTGCCATAATCCTATTCT 79000
|| ||| ||| | |||| || || || |||| | ||||| ||| |
Sbjct 695243 TTTTGG--GGTATAGATTCAATGTTTTGTATTGAACCACGGCTAGTGATAATTTGATTTT 695186
Query 79001 TGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 79060
| || || |||| |||||| || || | | | | | ||| | || || |
Sbjct 695185 TCATATCATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAA 695126
Query 79061 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCG 79120
| ||||| || || || | || | ||||| |||||||| ||| || || || | |
Sbjct 695125 CCTGAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAG 695066
Query 79121 ATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAAC 79180
|||||||||| |||| ||||| || ||||| || |||||||| ||||| | | ||||
Sbjct 695065 ATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAG 695006
Query 79181 TATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTC---CCAATCCCAAAGAT 79237
|| | | ||| | | | ||||| ||||| | | || ||||| ||| || |
Sbjct 695005 AGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCA---ACTCAGTCCAATTCCATAGTT 694949
Query 79238 CAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTG 79297
||| ||| || ||| | |||||| |||| |||||| || ||| | ||| |||
Sbjct 694948 CAGTCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTT 694889
Query 79298 TGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGT 79357
|| ||||| ||||| || ||||| || ||||| || || || ||||| || || |
Sbjct 694888 CATAAGTTTCGTAAGGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCAT 694829
Query 79358 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGAT 79417
| ||||| ||||| || || | | ||| | ||||| | ||| || | ||||
Sbjct 694828 AGTAAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTCGTAAGGAT 694769
Query 79418 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 79477
| | ||| || || ||||||||||| ||||| |||||||||||||| || | ||| |
Sbjct 694768 AGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCC 694709
Query 79478 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 79537
| |||||| | | ||||| || | ||||| | || ||||| || |||||||| |
Sbjct 694708 TGAAATTAGATTTCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTA 694649
Query 79538 GATTCC---TGACTATTACTTTGACCACATCCTTTAG---TTTGAGAAAATCAAATCGTC 79591
||||| | || | ||| | || ||||| || ||| |||||| || |
Sbjct 694648 AATTCCGCGTCACGGT--CTTAGTG-ACTTCCTTGAGGCGTTT---AAAATCGTATTTTT 694595
Query 79592 CATCTATT---ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT 79648
||| | |||||||| || | || | ||||| | ||| || || |||||||| |
Sbjct 694594 TGTCTGGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTACCTCGT 694535
Query 79649 TAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAAT 79708
|| | | ||| | | ||||| ||||| | ||||| || ||||| || || | ||
Sbjct 694534 CAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATAT 694475
Query 79709 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTT 79768
| ||||||||||||||| | ||||| ||||||||||| | || |||| || || || |
Sbjct 694474 TCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTCT 694415
Query 79769 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGT-AT 79827
| | ||| ||||||||||| | ||| | | | | || || | | | ||| | |
Sbjct 694414 CCACCTGCGATTCTATAATGGAAAACCAAAGGCTTTGGGCTTTAACTTT---CTTATTAG 694358
Query 79828 CTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGT 79885
| | | |||| ||| |||| ||| ||||| |||||| || || |||||||| ||||
Sbjct 694357 CACGTCCTTCTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAACTTCGT 694298
Query 79886 CTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTT 79945
|||||| ||||| | | |||||||| || ||||| || ||| | | || || |
Sbjct 694297 GTAATCCGGGACACTTATGTGGACACATTAATGACCAATCCTCATTTGCTTCAACACGCT 694238
Query 79946 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 80005
||||||| | ||||| ||||| | ||| ||||| |||||| | || ||||||||| |
Sbjct 694237 TCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTCGATGCTCCTCTT 694178
Query 80006 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 80065
|||| ||||| || || | ||| | || | | |||||||| ||||| || |||||||
Sbjct 694177 TTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGT 694118
Query 80066 ATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 80125
|||| || | | |||| |||||||| || || ||||| | || | || |||||
Sbjct 694117 ATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTAT 694058
Query 80126 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGC 80185
| |||| | ||||||||| | | ||||| ||||| ||||| || || | || |
Sbjct 694057 TGAAAACACGCAACATTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAATCGAAG 693998
Query 80186 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 80245
| || | || || ||| | || || || || || || || |||||| || |
Sbjct 693997 TGCCTTTAGCGCGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAATCA 693938
Query 80246 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT-GTTAAGT 80304
|||| ||| | | | || | | ||||| || ||| || || | ||| ||||| |
Sbjct 693937 ATGCACATTGATGTGCCGATGTAAATATGCCATCAATGGAGTCGTCGACCATAGTTAA-T 693879
Query 80305 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 80364
|||||||| ||| | ||| | | | || | ||| ||| | || || || ||
Sbjct 693878 AGAAAACATGAAGATAATTGTGGCTGTTTGGTAGCGGCAGCAAAGAGTGTTGGTGAGGCA 693819
Query 80365 TGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCAT 80424
|| ||||| | ||| || || | |||||| || || || || | |||||||||
Sbjct 693818 TGTGTAAAGTAACGTTCTGAAAGCAAATTGTATGTGTCGATTGCCGCATCTATATCCTCA 693759
Query 80425 TGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTA 80484
||| || || | || |||||||||||||| ||||| || | |||||| || || |
Sbjct 693758 CCATGTATACCAATGGCTACACGCATTAACATATGCTGTGGCCGTTCAACAATTTTACCA 693699
Query 80485 TTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 80544
|| | || | || || || ||| | ||| ||||| || ||||| || || ||
Sbjct 693698 TTCAACTTGAGTAAATAGGAACGTTCAAGAGTCTTAAACCCGAAATAATTATAACCGAAA 693639
Query 80545 TCTCGTTCGTAAATAATAACCGAGTT 80570
|| || || |||||||| | |||||
Sbjct 693638 TCACGATCATAAATAATTGCAGAGTT 693613
>seq925
Length=3171676
Score = 273 bits (302), Expect = 3e-68
Identities = 461/665 (69%), Gaps = 3/665 (0%)
Strand=Plus/Minus
Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889
||||||||| || || || || || || | || | || | ||||||||||||||
Sbjct 2021756 ACAATTCATACCAATTAGGTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTT 2021697
Query 49890 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTT 49949
|| || || | ||| || ||| ||| || ||| || | |||||||
Sbjct 2021696 AACTGCTTCAGATATGATTTCAATAATACGTTCCCTGCTGGGTTTCTGTATCAAATGTTG 2021637
Query 49950 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 50009
||||||||||| |||||||| || || | ||||||||| | || | || |||||
Sbjct 2021636 GAACATCAAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGA 2021577
Query 50010 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCC 50069
|| || | || ||||||| ||||| || ||||||||||| || || ||||| ||
Sbjct 2021576 GAATGTTAAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCC 2021517
Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG-- 50127
|||||| || ||||| || |||||||| |||| | | || ||| | | ||
Sbjct 2021516 GCTAAAGAATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGA 2021457
Query 50128 CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 50186
|| | | | | |||| | |||||||| ||||| || ||| ||||||||| ||
Sbjct 2021456 CTTTGAAGAAATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTC 2021397
Query 50187 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 50246
|| ||||| || | ||||| | ||| || | || |||| ||| || || || || |
Sbjct 2021396 AATTGCATTGAACAAATAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATAT 2021337
Query 50247 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 50306
||||||||||| || || | ||||| || || || ||||| ||||||||||| | ||
Sbjct 2021336 GCTATACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGC 2021277
Query 50307 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTC 50366
||| || | || |||||| || || ||||| | ||||||||||| || || || ||
Sbjct 2021276 CTCCGTTACTTGAACTTCTTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCATC 2021217
Query 50367 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTT 50426
||| |||||||| || ||||| || | ||||||| |||||||| || |||
Sbjct 2021216 CGAGGCGGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCG 2021157
Query 50427 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 50486
|||||||| | ||| || |||| |||||| |||||||| |||||||| || || ||
Sbjct 2021156 TGCCCAATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCTTC 2021097
Query 50487 TGCCT 50491
|||||
Sbjct 2021096 TGCCT 2021092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718252585081840
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