Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq925 242 4e-59 seq979 84.2 2e-11 >seq925 Length=3171676 Score = 242 bits (268), Expect = 4e-59 Identities = 485/711 (68%), Gaps = 12/711 (2%) Strand=Plus/Minus Query 13689 AGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTC 13748 ||||| | || || | ||| || | || |||||||| | ||||| | | ||||||| Sbjct 2021809 AGTTCGACCAGCAAACGATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTC 2021750 Query 13749 ATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCC 13808 ||||| ||||| |||||||| | | | ||||| ||||||| ||| || || || Sbjct 2021749 ATACCAATTAGGTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCT 2021690 Query 13809 TCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATT 13868 || ||| || ||||| || | || | | | | ||||| || || Sbjct 2021689 TCAGATATGATTTCAATAATACGTTCCCTGCTGGGTTTCTGTATCAAATGTTGGAACATC 2021630 Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 |||||||| ||||||||||| | ||||| || | || | || || || |||||| Sbjct 2021629 AAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTT 2021570 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 || || ||||| || || ||||| || | |||||| |||| ||||| ||| |||| Sbjct 2021569 AAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAG 2021510 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 ||||| || ||||| || ||||| || |||| ||||| ||||| ||| || Sbjct 2021509 AATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAA 2021450 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 || ||||| ||||| |||| || |||| | | ||| || ||||| ||| Sbjct 2021449 GAAATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGCA 2021390 Query 14109 TTAAATAAATATTCCTTCTCTTTA--GTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 || || ||||| || | | ||| || ||| ||| ||||| ||||| | || ||||| Sbjct 2021389 TTGAACAAATAGTCTCTTTGTTTGCCGTCCTT--AATATATGTGTCAATTAATATGCTAT 2021332 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 ||||||| ||||| | ||||||||||| || |||||||| || || || | || |||| Sbjct 2021331 ACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCG 2021272 Query 14227 ACCATTGTACTTCC-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 ||| ||||| || | ||| | ||| ||||||||||||| || |||||||| Sbjct 2021271 TTACTTGAACTTCTTGACTGAAA-CGTTCTACCAAATTTTCATTTACAATACCATCCGAG 2021213 Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTT 14342 || |||||||| || |||| || || ||| || || ||| |||| | ||| | Sbjct 2021212 GCGGCAAAAAAGGCTAATACGTGCGAAACAAA--ATGTCT-TTCGTTGTCAGTAAGTCGT 2021156 Query 14343 TTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14393 |||||| ||||||||| || | |||||| || || || ||||||||| Sbjct 2021155 GCCCAATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAA 2021105 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 || |||||| ||||||| | ||||||| ||| | | || | | |||||||| ||| Sbjct 2022067 TAGAAATCAGCATCTAACGTGAAAACATGATCCATTCTATTCGCAGTAACGCCCCATTTC 2022008 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 || ||||||| |||| | ||||||||||| || ||||| || || | ||| ||| |||| Sbjct 2022007 TGGTATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCATCTAATGAGATAAGTTCC 2021948 Query 13644 ATAAAA 13649 |||||| Sbjct 2021947 ATAAAA 2021942 >seq979 Length=634042 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 131658 AGATCCAAAAAAGATGCATAATGGAACAATAGAATACACAAGTATAGATATGCATAACGG 131717 ||||||||| || |||||||| || || |||||||||||| | || || | || Sbjct 307415 AGATCCAAAGAAAATGCATAACGGTACCATAGAATACACATCTCGCGACGCTCACCAAGG 307356 Query 131718 TGTATCCCCGTCTAGGCGAGGAGATTTAGAAATTTTAGGATATTGTATAATAAAATGGTT 131777 |||| || | | ||| | ||||| ||||| || |||||| ||||||| |||||| Sbjct 307355 TGTA---CCAACAATGCGCGCCGATTTTGAAATATTGGGATATAATATAATAGAATGGTC 307299 Query 131778 AGGCGGTAAATTGCCATGGG 131797 |||| || ||||||| |||| Sbjct 307298 AGGCAGTCAATTGCCTTGGG 307279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479717170140400