Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq925 235 5e-57 >seq925 Length=3171676 Score = 235 bits (260), Expect = 5e-57 Identities = 467/684 (68%), Gaps = 12/684 (2%) Strand=Plus/Minus Query 13504 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13563 || |||||||| | ||||| | | |||||||||||| ||||| |||||||| | | Sbjct 2021782 AATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAGGTTTACAGGTAATGCG 2021723 Query 13564 TTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCA 13623 | ||||| ||||||| ||| || || || || ||| || ||||| || Sbjct 2021722 TCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGATTTCAATAATACGTTCC 2021663 Query 13624 TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCC 13683 | || | | | | ||||| || || |||||||| ||||||||||| | ||| Sbjct 2021662 CTGCTGGGTTTCTGTATCAAATGTTGGAACATCAAACACGCGAAATCACAATGTAAACCC 2021603 Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 || || | || | || || || |||||||| || ||||| || || ||||| || Sbjct 2021602 TCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCATTAAACCACGTTTCTTA 2021543 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 13803 | |||||| |||| || || ||| ||||||||| || ||||| || ||||| || Sbjct 2021542 AGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCTTCAACAGCGGCAAATGCA 2021483 Query 13804 ATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAt 13863 |||| ||||| ||||| ||| || || ||||| ||||| |||| Sbjct 2021482 ATTATACGTTCACCAAAGTTTGCAGACTTTGAAGAAATCCAAGCCAGCGCCCAATCAGCC 2021423 Query 13864 ttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTA--G 13921 || |||| | | ||| || || ||||||||||| |||| || | | ||| | Sbjct 2021422 TTACGCTTAACAGCAGGCATCGTCTCAATTGCATTGAACAAATAGTCTCTTTGTTTGCCG 2021363 Query 13922 TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAG 13981 | ||| ||| ||||| ||||| | || |||||||||||| ||||| | ||||| |||| Sbjct 2021362 TCCTT--AATATATGTGTCAATTAATATGCTATACATTTCTGAGTGCACATTTTCCATAG 2021305 Query 13982 CTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTT 14040 | || |||||||| || ||||| | || || | ||| || || || | ||| | | Sbjct 2021304 CGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACTTCTTGACTGAAA-CGT 2021246 Query 14041 TCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTA 14100 ||| |||| |||||||| ||||||||||| || |||||||| || |||| || | Sbjct 2021245 TCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGGCTAATACGTGCGAA 2021186 Query 14101 ATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGA 14157 | ||| || || ||| |||| | ||| | |||||| |||||||||| || | | Sbjct 2021185 ACAAA--ATGTCT-TTCGTTGTCAGTAAGTCGTGCCCAATCATCTAAATCCTTGGATAAA 2021129 Query 14158 TCTACTTCATCAACTGTCCAAAAA 14181 ||||| || || || ||||||||| Sbjct 2021128 TCTACCTCTTCCACGGTCCAAAAA 2021105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478577995857840