Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 491 6e-134
seq925 264 2e-65
>seq1762
Length=809008
Score = 491 bits (544), Expect = 6e-134
Identities = 1222/1845 (66%), Gaps = 43/1845 (2%)
Strand=Plus/Minus
Query 70824 GGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATG 70883
|||||| || || | ||| |||||||| ||||||| ||| |||| || ||||||||
Sbjct 695447 GGCTTT-GTGCGCAAATAATACATGCCGGTTTTTAAACCTGCTTTCCAACCATAAAAATG 695389
Query 70884 CATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTG 70943
||| || |||||| || |||| || |||| ||| ||||| | || ||||||||
Sbjct 695388 TATAGAAGTAAGTTTGCCGTAATTAGGTTCTGCTACGTGTATATTAAAGGATTGACTTTG 695329
Query 70944 ATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCA 71003
||||| ||||| || | || ||||||||||||||| || ||| | ||| |||||
Sbjct 695328 GTCGATAAAGGCACCACGATCAGCAGCCATTTTTATGGAAGTTTTTACCGAAATCTCCCA 695269
Query 71004 AATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAGGTTTGTATTC-------TGAATG 71055
|| |||||||| | | ||| || | || ||| ||| | |||| || ||
Sbjct 695268 AACGGTTTTATACAGTTCGCGTA---TGTTTTGG--GGTATAGATTCAATGTTTTGTATT 695214
Query 71056 GATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTT 71115
|| |||| | ||||| |||||| || || |||| |||||| || ||
Sbjct 695213 GAACCACGGCTAGTGATAATTTGATTTTTCATATCATCATCCCATAAGCCCAATTCAGTA 695154
Query 71116 AAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTG 71175
| | | | | |||| | || || || ||||| || || || | || | |||||
Sbjct 695153 AGGTCACGCAACAAATGATGGTTTACAACCTGAAACTCACCGGAAAGCACACGGCGAGTA 695094
Query 71176 TAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 71235
|||||||| ||| ||||| || | || |||||||| |||| ||||| || |||||
Sbjct 695093 TAAATATTGGAGGTGTACGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAA 695034
Query 71236 GCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCT 71295
|| || ||||| ||||| | | || | || | | ||||||| ||||| |||
Sbjct 695033 GCGGTTGGCATGGGTGCAAGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCT 694974
Query 71296 TTTAGAGATTC---CCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNN 71352
|| | | || ||||||||| || || | ||
Sbjct 694973 TTCA---ACTCAGTCCAATTCCATAGTTCAGTCGGCTTTTTATCCCACATATCATACTGT 694917
Query 71353 NNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCT 71412
|| || || ||| | ||| ||| |||| || ||||| || || |||||| ||
Sbjct 694916 AAAATACCTTTGCTAACCGGTGAACCTTCATAAGTTTCGTAAGGCCCAAATTTTTCAGCC 694857
Query 71413 AGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGA 71472
| ||| || || || ||||| || ||||| ||||| ||||| || || | | ||| |
Sbjct 694856 AATTCGCAGCTGGCTTCTAAAGCACCATAGTAAATTGTTTCAAATATTTGTTGATTCAAT 694797
Query 71473 TCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 71532
||||| ||| || | ||||| | ||| || || ||||||||||| |||
Sbjct 694796 AGGAATGCTTGTTCGCTTTCGTAAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCT 694737
Query 71533 TGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGA 71592
|| || ||||||||||| || | || || |||||| | | ||||| || | |||
Sbjct 694736 TGTACACCAATACCGATCGGACGATGCCTGAAATTAGATTTCTTGGCTTCAGGCAATGGA 694677
Query 71593 TAATAATTAATATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCC 71649
|| | || ||||| || |||||||| | ||| | | || | ||| | || |||
Sbjct 694676 TAGTGGTTTATATCAATGATTTTATTTAAATTCCGCGTCACGGT--CTTAGTG-ACTTCC 694620
Query 71650 TTTAG---TTTGAGAAAATCAAATCTCCCATCTATT---ACAAACACGTTCAAGGCAACA 71703
|| || ||| |||||| || | ||| | ||||||| || | |||||
Sbjct 694619 TTGAGGCGTTT---AAAATCGTATTTTTTGTCTGGTGTAACAAACATATTGAGGGCAATC 694563
Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763
||||| | ||| || || |||||||| | || | | ||| | | |||||| |||||
Sbjct 694562 GATGCTAAATTGCATACAGCTACCTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCAT 694503
Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823
| |||||| || || || || || | ||| ||||||||||||||| | ||||| ||||||
Sbjct 694502 AAATTACTGCATTTAATTGTGCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCC 694443
Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883
||||| | ||| |||| || || || || | ||| ||||||||||| | ||| | |
Sbjct 694442 TTATATAACATATACGGTGTGCCCGTCTCCACCTGCGATTCTATAATGGAAAACCAAAGG 694383
Query 71884 ACTCGAGCCTTTATTATATTCTT-GTATCTCTTTTCTCTTTCGTATTGTGTATATAATCG 71942
| | || || | | | || || | | || || || ||| |||| ||| |||||
Sbjct 694382 CTTTGGGCTTTAACTTTCTTATTAGCACGTCCTT-CTTGTTCATATTTTGTGTATAACTT 694324
Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002
|||||| || || |||||| | | || |||||| ||||| | || |||||||| |||||
Sbjct 694323 TTCGAATTCTTCACCCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGA 694264
Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062
||| || ||| | | || || |||||||| | ||||| ||||| | ||| |||
Sbjct 694263 CCAATCCTCATTTGCTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAA 694204
Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122
|| |||||| | || ||||||||| ||||| ||||| || || | ||| | || | |
Sbjct 694203 TAAATCTCTAGCTCGATGCTCCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAA 694144
Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182
|||||||| ||||| || ||||||||||| || | | |||| || ||||| || ||
Sbjct 694143 AATATCAGCGTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACC 694084
Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242
||||| | || | || |||||| |||| | ||||||||| | | ||||| ||
Sbjct 694083 TTGATCCACATAACGTGCTACGTTATTGAAAACACGCAACATTGGTACCAAGCCATTTGA 694024
Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGA 72300
|| ||||| || || | || | | || | || || || | || ||| ||
Sbjct 694023 TGTGCCATTCGTGCCCGCAATCGAAGTGCCTTTAGCGCGTATACAATGAACATT--TAAG 693966
Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360
|| || || || || |||||| || ||||| ||| | | | || | | |||||
Sbjct 693965 CCAATACCACCAGCAGATTTAGAAATCAATGCACATTGATGTGCCGATGTAAATATGCCA 693906
Query 72361 TCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419
|| || || || | ||| ||||| ||||||||| ||| | ||| | | | ||
Sbjct 693905 TCAATGGAGTCGTCGACCATAGTTAA-TAGAAAACATGAAGATAATTGTGGCTGTTTGGT 693847
Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479
| ||| ||| | || || || || || ||||| | ||| || || | ||||||
Sbjct 693846 AGCGGCAGCAAAGAGTGTTGGTGAGGCATGTGTAAAGTAACGTTCTGAAAGCAAATTGTA 693787
Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539
|| || || || | ||||||||| |||||| || | || ||||||||||||||
Sbjct 693786 TGTGTCGATTGCCGCATCTATATCCTCACCATGTATACCAATGGCTACACGCATTAACAT 693727
Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599
|||||| || | |||||| || || ||| | || | || ||||| ||| | |||
Sbjct 693726 ATGCTGTGGCCGTTCAACAATTTTACCATTCAACTTGAGTAAATAGGAACGTTCAAGAGT 693667
Query 72600 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644
||||| || ||||| || || || || || || ||||||||
Sbjct 693666 CTTAAACCCGAAATAATTATAACCGAAATCACGATCATAAATAAT 693622
>seq925
Length=3171676
Score = 264 bits (292), Expect = 2e-65
Identities = 466/671 (69%), Gaps = 15/671 (2%)
Strand=Plus/Minus
Query 41935 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 41994
||||||||| || || || || || || | || | || | ||||||||||||||
Sbjct 2021756 ACAATTCATACCAATTAGGTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTT 2021697
Query 41995 GACCGCGTCTGTTATAATAG--ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGT 42052
|| || || | ||| || || ||| ||| | | || ||| | | ||||||
Sbjct 2021696 AACTGCTTCAGATATGATTTCAATAATAC-GTTCCCTG-CTGGGTTTCTGTATCAAATGT 2021639
Query 42053 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTG 42112
| ||||||||||| |||||||| || || | |||||| || | || || || |||
Sbjct 2021638 TGGAACATCAAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTG 2021579
Query 42113 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT 42172
|| || || | || ||||||| ||||| || ||||||||||| || || |||||
Sbjct 2021578 GAGAATGTTAAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTG 2021519
Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 42232
|| |||||| || ||||| || || ||||| ||||| | | || ||| | |||
Sbjct 2021518 CCGCTAAAGAATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCA 2021459
Query 42233 --CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 42289
|| | | | | |||| | |||||||| ||||| || ||| |||||||||
Sbjct 2021458 GACTTTGAAGAAATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTC 2021399
Query 42290 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAA 42349
|| || ||||| || | ||||| | ||| || | || |||| |||||| || || ||
Sbjct 2021398 TCAATTGCATTGAACAAATAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAAT 2021339
Query 42350 AGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG 42409
| |||||||||||||| || | ||||| || || || ||||| ||||||||||| |
Sbjct 2021338 ATGCTATACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGC 2021279
Query 42410 GCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCG 42469
||||| || || || |||||| || || ||||| | |||||||| || || || ||
Sbjct 2021278 GCCTCCGTTACTTGAACTTCTTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCA 2021219
Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGT---T 42526
|| ||| |||||||| || ||||| || | ||||| | |||||| ||| |
Sbjct 2021218 TCCGAGGCGGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGT----TGTCAGT 2021163
Query 42527 AATTTAT-TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGA 42585
|| | | |||||||| | ||| || |||| |||||| ||||| || |||||||| ||
Sbjct 2021162 AAGTCGTGCCCAATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGA 2021103
Query 42586 TGCTTCTGCCT 42596
||||||||||
Sbjct 2021102 CGCTTCTGCCT 2021092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671124049032560
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