Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1762 491 6e-134 seq925 264 2e-65 >seq1762 Length=809008 Score = 491 bits (544), Expect = 6e-134 Identities = 1222/1845 (66%), Gaps = 43/1845 (2%) Strand=Plus/Minus Query 70824 GGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATG 70883 |||||| || || | ||| |||||||| ||||||| ||| |||| || |||||||| Sbjct 695447 GGCTTT-GTGCGCAAATAATACATGCCGGTTTTTAAACCTGCTTTCCAACCATAAAAATG 695389 Query 70884 CATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTG 70943 ||| || |||||| || |||| || |||| ||| ||||| | || |||||||| Sbjct 695388 TATAGAAGTAAGTTTGCCGTAATTAGGTTCTGCTACGTGTATATTAAAGGATTGACTTTG 695329 Query 70944 ATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCA 71003 ||||| ||||| || | || ||||||||||||||| || ||| | ||| ||||| Sbjct 695328 GTCGATAAAGGCACCACGATCAGCAGCCATTTTTATGGAAGTTTTTACCGAAATCTCCCA 695269 Query 71004 AATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAGGTTTGTATTC-------TGAATG 71055 || |||||||| | | ||| || | || ||| ||| | |||| || || Sbjct 695268 AACGGTTTTATACAGTTCGCGTA---TGTTTTGG--GGTATAGATTCAATGTTTTGTATT 695214 Query 71056 GATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTT 71115 || |||| | ||||| |||||| || || |||| |||||| || || Sbjct 695213 GAACCACGGCTAGTGATAATTTGATTTTTCATATCATCATCCCATAAGCCCAATTCAGTA 695154 Query 71116 AAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTG 71175 | | | | | |||| | || || || ||||| || || || | || | ||||| Sbjct 695153 AGGTCACGCAACAAATGATGGTTTACAACCTGAAACTCACCGGAAAGCACACGGCGAGTA 695094 Query 71176 TAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 71235 |||||||| ||| ||||| || | || |||||||| |||| ||||| || ||||| Sbjct 695093 TAAATATTGGAGGTGTACGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAA 695034 Query 71236 GCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCT 71295 || || ||||| ||||| | | || | || | | ||||||| ||||| ||| Sbjct 695033 GCGGTTGGCATGGGTGCAAGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCT 694974 Query 71296 TTTAGAGATTC---CCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNN 71352 || | | || ||||||||| || || | || Sbjct 694973 TTCA---ACTCAGTCCAATTCCATAGTTCAGTCGGCTTTTTATCCCACATATCATACTGT 694917 Query 71353 NNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCT 71412 || || || ||| | ||| ||| |||| || ||||| || || |||||| || Sbjct 694916 AAAATACCTTTGCTAACCGGTGAACCTTCATAAGTTTCGTAAGGCCCAAATTTTTCAGCC 694857 Query 71413 AGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGA 71472 | ||| || || || ||||| || ||||| ||||| ||||| || || | | ||| | Sbjct 694856 AATTCGCAGCTGGCTTCTAAAGCACCATAGTAAATTGTTTCAAATATTTGTTGATTCAAT 694797 Query 71473 TCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 71532 ||||| ||| || | ||||| | ||| || || ||||||||||| ||| Sbjct 694796 AGGAATGCTTGTTCGCTTTCGTAAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCT 694737 Query 71533 TGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGA 71592 || || ||||||||||| || | || || |||||| | | ||||| || | ||| Sbjct 694736 TGTACACCAATACCGATCGGACGATGCCTGAAATTAGATTTCTTGGCTTCAGGCAATGGA 694677 Query 71593 TAATAATTAATATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCC 71649 || | || ||||| || |||||||| | ||| | | || | ||| | || ||| Sbjct 694676 TAGTGGTTTATATCAATGATTTTATTTAAATTCCGCGTCACGGT--CTTAGTG-ACTTCC 694620 Query 71650 TTTAG---TTTGAGAAAATCAAATCTCCCATCTATT---ACAAACACGTTCAAGGCAACA 71703 || || ||| |||||| || | ||| | ||||||| || | ||||| Sbjct 694619 TTGAGGCGTTT---AAAATCGTATTTTTTGTCTGGTGTAACAAACATATTGAGGGCAATC 694563 Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 ||||| | ||| || || |||||||| | || | | ||| | | |||||| ||||| Sbjct 694562 GATGCTAAATTGCATACAGCTACCTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCAT 694503 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 | |||||| || || || || || | ||| ||||||||||||||| | ||||| |||||| Sbjct 694502 AAATTACTGCATTTAATTGTGCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCC 694443 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883 ||||| | ||| |||| || || || || | ||| ||||||||||| | ||| | | Sbjct 694442 TTATATAACATATACGGTGTGCCCGTCTCCACCTGCGATTCTATAATGGAAAACCAAAGG 694383 Query 71884 ACTCGAGCCTTTATTATATTCTT-GTATCTCTTTTCTCTTTCGTATTGTGTATATAATCG 71942 | | || || | | | || || | | || || || ||| |||| ||| ||||| Sbjct 694382 CTTTGGGCTTTAACTTTCTTATTAGCACGTCCTT-CTTGTTCATATTTTGTGTATAACTT 694324 Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 |||||| || || |||||| | | || |||||| ||||| | || |||||||| ||||| Sbjct 694323 TTCGAATTCTTCACCCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGA 694264 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||| || ||| | | || || |||||||| | ||||| ||||| | ||| ||| Sbjct 694263 CCAATCCTCATTTGCTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAA 694204 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 || |||||| | || ||||||||| ||||| ||||| || || | ||| | || | | Sbjct 694203 TAAATCTCTAGCTCGATGCTCCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAA 694144 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 |||||||| ||||| || ||||||||||| || | | |||| || ||||| || || Sbjct 694143 AATATCAGCGTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACC 694084 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||||| | || | || |||||| |||| | ||||||||| | | ||||| || Sbjct 694083 TTGATCCACATAACGTGCTACGTTATTGAAAACACGCAACATTGGTACCAAGCCATTTGA 694024 Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGA 72300 || ||||| || || | || | | || | || || || | || ||| || Sbjct 694023 TGTGCCATTCGTGCCCGCAATCGAAGTGCCTTTAGCGCGTATACAATGAACATT--TAAG 693966 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || || || || || |||||| || ||||| ||| | | | || | | ||||| Sbjct 693965 CCAATACCACCAGCAGATTTAGAAATCAATGCACATTGATGTGCCGATGTAAATATGCCA 693906 Query 72361 TCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419 || || || || | ||| ||||| ||||||||| ||| | ||| | | | || Sbjct 693905 TCAATGGAGTCGTCGACCATAGTTAA-TAGAAAACATGAAGATAATTGTGGCTGTTTGGT 693847 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 | ||| ||| | || || || || || ||||| | ||| || || | |||||| Sbjct 693846 AGCGGCAGCAAAGAGTGTTGGTGAGGCATGTGTAAAGTAACGTTCTGAAAGCAAATTGTA 693787 Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 || || || || | ||||||||| |||||| || | || |||||||||||||| Sbjct 693786 TGTGTCGATTGCCGCATCTATATCCTCACCATGTATACCAATGGCTACACGCATTAACAT 693727 Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 |||||| || | |||||| || || ||| | || | || ||||| ||| | ||| Sbjct 693726 ATGCTGTGGCCGTTCAACAATTTTACCATTCAACTTGAGTAAATAGGAACGTTCAAGAGT 693667 Query 72600 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| || ||||| || || || || || || |||||||| Sbjct 693666 CTTAAACCCGAAATAATTATAACCGAAATCACGATCATAAATAAT 693622 >seq925 Length=3171676 Score = 264 bits (292), Expect = 2e-65 Identities = 466/671 (69%), Gaps = 15/671 (2%) Strand=Plus/Minus Query 41935 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 41994 ||||||||| || || || || || || | || | || | |||||||||||||| Sbjct 2021756 ACAATTCATACCAATTAGGTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTT 2021697 Query 41995 GACCGCGTCTGTTATAATAG--ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGT 42052 || || || | ||| || || ||| ||| | | || ||| | | |||||| Sbjct 2021696 AACTGCTTCAGATATGATTTCAATAATAC-GTTCCCTG-CTGGGTTTCTGTATCAAATGT 2021639 Query 42053 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTG 42112 | ||||||||||| |||||||| || || | |||||| || | || || || ||| Sbjct 2021638 TGGAACATCAAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTG 2021579 Query 42113 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT 42172 || || || | || ||||||| ||||| || ||||||||||| || || ||||| Sbjct 2021578 GAGAATGTTAAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTG 2021519 Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 42232 || |||||| || ||||| || || ||||| ||||| | | || ||| | ||| Sbjct 2021518 CCGCTAAAGAATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCA 2021459 Query 42233 --CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 42289 || | | | | |||| | |||||||| ||||| || ||| ||||||||| Sbjct 2021458 GACTTTGAAGAAATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTC 2021399 Query 42290 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAA 42349 || || ||||| || | ||||| | ||| || | || |||| |||||| || || || Sbjct 2021398 TCAATTGCATTGAACAAATAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAAT 2021339 Query 42350 AGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG 42409 | |||||||||||||| || | ||||| || || || ||||| ||||||||||| | Sbjct 2021338 ATGCTATACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGC 2021279 Query 42410 GCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCG 42469 ||||| || || || |||||| || || ||||| | |||||||| || || || || Sbjct 2021278 GCCTCCGTTACTTGAACTTCTTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCA 2021219 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGT---T 42526 || ||| |||||||| || ||||| || | ||||| | |||||| ||| | Sbjct 2021218 TCCGAGGCGGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGT----TGTCAGT 2021163 Query 42527 AATTTAT-TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGA 42585 || | | |||||||| | ||| || |||| |||||| ||||| || |||||||| || Sbjct 2021162 AAGTCGTGCCCAATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGA 2021103 Query 42586 TGCTTCTGCCT 42596 |||||||||| Sbjct 2021102 CGCTTCTGCCT 2021092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671124049032560