Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 159 4e-34
seq454 123 3e-23
seq1310 107 2e-18
>seq1762
Length=809008
Score = 159 bits (176), Expect = 4e-34
Identities = 695/1083 (64%), Gaps = 40/1083 (4%)
Strand=Plus/Minus
Query 156549 ACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACG 156608
|||| ||||| || || || || | ||||||||| || | || || |||||| |
Sbjct 695077 ACGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTG 695018
Query 156609 CCACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGT 156668
| | || || || || |||| || | ||| | || ||| |||||||| | ||| |
Sbjct 695017 CAAGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAAT 694958
Query 156669 CCCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTT 156728
||||| |||||| ||| ||||| ||| || || || || |||| ||| |
Sbjct 694957 TCCATAGTTCAGTCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCG 694898
Query 156729 TGCTACCGGCAAACGTGCTATAAGGCTCACTAACAGAT--GCCAGTTCGTAACTGGCCTC 156786
||| || | || |||||| || || | |||| |||| | ||||| ||
Sbjct 694897 GTGAACCTTCATAAGTTTCGTAAGGCCCA--AATTTTTCAGCCAATTCGCAGCTGGCTTC 694840
Query 156787 GAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCT 156846
| ||| ||| || | |||||| ||||||| ||||||||| | || |||||
Sbjct 694839 TAAAGCACCATAGTAAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCT 694780
Query 156847 CACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGAT 156906
|||| || ||||| | | ||||| || || |||||||| | ||||| |||||
Sbjct 694779 TTCGTAAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGAT 694720
Query 156907 GGGACGATGGCGCATATTAGAtttttttGCAGTTTCA---ATAGGGTAGAAATTGCGATC 156963
|||||||| | | ||||||||| || || |||| | || ||| || |||
Sbjct 694719 CGGACGATGCCTGAAATTAGATTTCTTGGC---TTCAGGCAATGGATAGTGGTTTATATC 694663
Query 156964 AATAATTTTATTCAAACTATCCACTACATGTT-----TGACCACAGTGTGCAATAGTTGA 157018
||| |||||||| ||| | || | || | | |||| | || | ||| |
Sbjct 694662 AATGATTTTATTTAAATT--CCGCGTCACGGTCTTAGTGACTTCCTTGAGGC---GTTTA 694608
Query 157019 AAATCAAAAGTATCAT-TATTG--ATATATTTATTGACGGCAATCGACGCTAGATTACAT 157075
||||| | | | | | || | | | |||||| ||||||||| |||| ||| |||
Sbjct 694607 AAATCGTATTTTTTGTCTGGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCAT 694548
Query 157076 ACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTT 157135
|| || ||||| || || |||| | || ||||| | || ||||| ||||||||
Sbjct 694547 ACAGCTACCTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTA 694488
Query 157136 ATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTAC 157195
|| || ||| |||||| || || | || ||||| ||||| |||||||| |||
Sbjct 694487 ATTGTGCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATAC 694428
Query 157196 GGTGTGCCGGTTTCGGCTTGAATTTCTATGATGTTGCGCATTAATGTAACCGCGGGCATT 157255
|||||||| || || | || |||||| ||| | | || | | |||| ||
Sbjct 694427 GGTGTGCCCGTCTCCACCTGCGATTCTATAATG--GAAAACCAAAG--GCTTTGGGCTTT 694372
Query 157256 TGCTCGCGAA-----ACTGGCCTTTATCCTCGTAATGTTTGTACCAGTATTCAAAGTCAT 157310
|| | | || | |||| | || || | | |||| | | ||| || || |
Sbjct 694371 AACTTTCTTATTAGCAC-GTCCTTCTTGTTCATATTTTGTGTATAACTTTTCGAATTCTT 694313
Query 157311 CACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATAC-CG 157369
|||| | |||| | ||||||| | ||||||||||||||||| || | |
Sbjct 694312 CACCCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCA-ATCCTCA 694254
Query 157370 TTTTCTTCAACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCACGC 157429
||| ||||||| || |||||||||| || || | ||| ||||| | | ||||| |
Sbjct 694253 TTTGCTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTA 694194
Query 157430 GCTTTGGTG-TCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCA 157488
|| | | || || || | || | ||| | | |||| || | ||| ||
Sbjct 694193 GC-TCGATGCTCCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGC 694135
Query 157489 ATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTT---GCCACCTTGATCCAC 157545
||||| || || | ||| | || |||||| ||| || |||||||||||||||
Sbjct 694134 GTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCAC 694075
Query 157546 GTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTT 157605
| ||| | | ||||| ||||| |||| |||||||| || || | | ||||| ||
Sbjct 694074 ATAACGTGCTACGTTATTGAAAACACGCAACATTGGTACCAAGCCATTTGATGTGCCATT 694015
Query 157606 CGT 157608
|||
Sbjct 694014 CGT 694012
>seq454
Length=983520
Score = 123 bits (136), Expect = 3e-23
Identities = 167/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| || || |||||||| || ||||| | |||||||| ||||| |||||||| |||
Sbjct 254448 GCCACCACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 254507
Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075
|| |||| || | ||||| || || || || ||| |||||| |||||| ||||| ||||
Sbjct 254508 CAAGGTGCGTCCA-TCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAG 254566
Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135
| || ||||| ||||| || || || | | || | || || | ||||| |
Sbjct 254567 GAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAA 254626
Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
| || | ||| | || ||||||||||| || || ||||| |||||||||
Sbjct 254627 CCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCATA 254676
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || |||||||| || ||||||| ||||| || ||||| |||||||| || |
Sbjct 254677 CCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 254736
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| |||||| |||||||| || ||| | |||| |||||| ||||| || ||
Sbjct 254737 AAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGA 254796
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| || || || || || | | || | || || | ||||| ||
Sbjct 254797 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGACC 254856
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | ||| | || ||||||||||| || || ||||| |||||||||
Sbjct 254857 TCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCATA 254904
Score = 93.3 bits (102), Expect = 4e-14
Identities = 139/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 142991 GATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGC 143049
||||||||||| |||||||| || || |||| || | ||||| | || || || ||
Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAACTGCTTGCCGGC 254312
Query 143050 ATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAG 143109
| |||||| |||||| ||||| || || || ||||| ||||| ||||| || |
Sbjct 254313 AAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCAC 254372
Query 143110 CTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTT 143169
| || | || || | || || ||||| | || | || ||||||||||| |||||
Sbjct 254373 ATTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTT 254432
Query 143170 TACGAATATTTGCAT 143184
||||| ||||||||
Sbjct 254433 AACGAAAATTTGCAT 254447
>seq1310
Length=3030561
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | |||||| || || |||| || || || ||||| || ||||||||| |
Sbjct 645207 CCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGAC 645148
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| ||||| | |||||| || || |||||| |||||| ||||| || ||
Sbjct 645147 AAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 645088
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||||||||| ||||| ||| | | ||| | ||||| | || || ||
Sbjct 645087 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACC 645028
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | ||| | ||||| || |||| |||||| || || || |||||
Sbjct 645027 TCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507002954149920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |