Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1762 159 4e-34 seq454 123 3e-23 seq1310 107 2e-18 >seq1762 Length=809008 Score = 159 bits (176), Expect = 4e-34 Identities = 695/1083 (64%), Gaps = 40/1083 (4%) Strand=Plus/Minus Query 156549 ACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACG 156608 |||| ||||| || || || || | ||||||||| || | || || |||||| | Sbjct 695077 ACGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTG 695018 Query 156609 CCACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGT 156668 | | || || || || |||| || | ||| | || ||| |||||||| | ||| | Sbjct 695017 CAAGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAAT 694958 Query 156669 CCCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTT 156728 ||||| |||||| ||| ||||| ||| || || || || |||| ||| | Sbjct 694957 TCCATAGTTCAGTCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCG 694898 Query 156729 TGCTACCGGCAAACGTGCTATAAGGCTCACTAACAGAT--GCCAGTTCGTAACTGGCCTC 156786 ||| || | || |||||| || || | |||| |||| | ||||| || Sbjct 694897 GTGAACCTTCATAAGTTTCGTAAGGCCCA--AATTTTTCAGCCAATTCGCAGCTGGCTTC 694840 Query 156787 GAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCT 156846 | ||| ||| || | |||||| ||||||| ||||||||| | || ||||| Sbjct 694839 TAAAGCACCATAGTAAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCT 694780 Query 156847 CACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGAT 156906 |||| || ||||| | | ||||| || || |||||||| | ||||| ||||| Sbjct 694779 TTCGTAAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGAT 694720 Query 156907 GGGACGATGGCGCATATTAGAtttttttGCAGTTTCA---ATAGGGTAGAAATTGCGATC 156963 |||||||| | | ||||||||| || || |||| | || ||| || ||| Sbjct 694719 CGGACGATGCCTGAAATTAGATTTCTTGGC---TTCAGGCAATGGATAGTGGTTTATATC 694663 Query 156964 AATAATTTTATTCAAACTATCCACTACATGTT-----TGACCACAGTGTGCAATAGTTGA 157018 ||| |||||||| ||| | || | || | | |||| | || | ||| | Sbjct 694662 AATGATTTTATTTAAATT--CCGCGTCACGGTCTTAGTGACTTCCTTGAGGC---GTTTA 694608 Query 157019 AAATCAAAAGTATCAT-TATTG--ATATATTTATTGACGGCAATCGACGCTAGATTACAT 157075 ||||| | | | | | || | | | |||||| ||||||||| |||| ||| ||| Sbjct 694607 AAATCGTATTTTTTGTCTGGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCAT 694548 Query 157076 ACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTT 157135 || || ||||| || || |||| | || ||||| | || ||||| |||||||| Sbjct 694547 ACAGCTACCTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTA 694488 Query 157136 ATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTAC 157195 || || ||| |||||| || || | || ||||| ||||| |||||||| ||| Sbjct 694487 ATTGTGCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATAC 694428 Query 157196 GGTGTGCCGGTTTCGGCTTGAATTTCTATGATGTTGCGCATTAATGTAACCGCGGGCATT 157255 |||||||| || || | || |||||| ||| | | || | | |||| || Sbjct 694427 GGTGTGCCCGTCTCCACCTGCGATTCTATAATG--GAAAACCAAAG--GCTTTGGGCTTT 694372 Query 157256 TGCTCGCGAA-----ACTGGCCTTTATCCTCGTAATGTTTGTACCAGTATTCAAAGTCAT 157310 || | | || | |||| | || || | | |||| | | ||| || || | Sbjct 694371 AACTTTCTTATTAGCAC-GTCCTTCTTGTTCATATTTTGTGTATAACTTTTCGAATTCTT 694313 Query 157311 CACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATAC-CG 157369 |||| | |||| | ||||||| | ||||||||||||||||| || | | Sbjct 694312 CACCCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCA-ATCCTCA 694254 Query 157370 TTTTCTTCAACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCACGC 157429 ||| ||||||| || |||||||||| || || | ||| ||||| | | ||||| | Sbjct 694253 TTTGCTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTA 694194 Query 157430 GCTTTGGTG-TCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCA 157488 || | | || || || | || | ||| | | |||| || | ||| || Sbjct 694193 GC-TCGATGCTCCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGC 694135 Query 157489 ATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTT---GCCACCTTGATCCAC 157545 ||||| || || | ||| | || |||||| ||| || ||||||||||||||| Sbjct 694134 GTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCAC 694075 Query 157546 GTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTT 157605 | ||| | | ||||| ||||| |||| |||||||| || || | | ||||| || Sbjct 694074 ATAACGTGCTACGTTATTGAAAACACGCAACATTGGTACCAAGCCATTTGATGTGCCATT 694015 Query 157606 CGT 157608 ||| Sbjct 694014 CGT 694012 >seq454 Length=983520 Score = 123 bits (136), Expect = 3e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || |||||||| || ||||| | |||||||| ||||| |||||||| ||| Sbjct 254448 GCCACCACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 254507 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || |||| || | ||||| || || || || ||| |||||| |||||| ||||| |||| Sbjct 254508 CAAGGTGCGTCCA-TCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAG 254566 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| ||||| || || || | | || | || || | ||||| | Sbjct 254567 GAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAA 254626 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | || | ||| | || ||||||||||| || || ||||| ||||||||| Sbjct 254627 CCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCATA 254676 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || |||||||| || ||||||| ||||| || ||||| |||||||| || | Sbjct 254677 CCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 254736 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| |||||||| || ||| | |||| |||||| ||||| || || Sbjct 254737 AAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGA 254796 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || || || | | || | || || | ||||| || Sbjct 254797 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGACC 254856 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || ||||||||||| || || ||||| ||||||||| Sbjct 254857 TCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCATA 254904 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 142991 GATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGC 143049 ||||||||||| |||||||| || || |||| || | ||||| | || || || || Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAACTGCTTGCCGGC 254312 Query 143050 ATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAG 143109 | |||||| |||||| ||||| || || || ||||| ||||| ||||| || | Sbjct 254313 AAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCAC 254372 Query 143110 CTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTT 143169 | || | || || | || || ||||| | || | || ||||||||||| ||||| Sbjct 254373 ATTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTT 254432 Query 143170 TACGAATATTTGCAT 143184 ||||| |||||||| Sbjct 254433 AACGAAAATTTGCAT 254447 >seq1310 Length=3030561 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| || || || ||||| || ||||||||| | Sbjct 645207 CCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGAC 645148 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | |||||| || || |||||| |||||| ||||| || || Sbjct 645147 AAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 645088 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| ||| | | ||| | ||||| | || || || Sbjct 645087 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACC 645028 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || |||| |||||| || || || ||||| Sbjct 645027 TCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507002954149920