Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1113 192 9e-44 seq1080 84.2 3e-11 >seq1113 Length=4038739 Score = 192 bits (212), Expect = 9e-44 Identities = 492/742 (66%), Gaps = 24/742 (3%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 ||||||||||| ||||| || || ||||| || | | || ||||| ||||| |||||| Sbjct 3508250 TTGCGGTAAAAAATGACGCCAGCACGAGGCCCACGTAAGGTTTTGTGTGTTGTTGTGGTC 3508191 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 || | || || ||||| || ||||| | | || | ||| || ||||| Sbjct 3508190 ACTACATCGGCGTATTCAAATGGTGATGGAATCAAGCCAGCTGCTACCAAACCAGCAATA 3508131 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || |||||||| | || ||| | | | |||| || | ||||| || | Sbjct 3508130 TGCGCCATATCGGCAAAGAGATAGGCGTCATTTTGATCGCAAACATTACGGAAGCGAGCA 3508071 Query 127282 TAGTCCAAGCGCCGAGGATAGCA----ACTGGTGCCGGCTATGATTAGCCTAGGTTTGAA 127337 || || | | |||| ||| || ||| || || ||||||| | || ||||| Sbjct 3508070 TAATCAAGACAACGAGAATAACATGAAACT----CCAGCAATGATTACGCGTGGCTTGAA 3508015 Query 127338 TAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTT 127397 || |||||| || | | |||||| | ||||||| || || ||||| || ||||| || Sbjct 3508014 GAGTTTGGCATTCGCCTCCAGTTTGTCGTAGTCGATCAGACCTGTCTGTGGGTCCACTTT 3507955 Query 127398 GTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--CGTT-----GCGG-----AA 127445 |||||||| ||||| ||| | | || ||||| || | |||| || | || Sbjct 3507954 ATACGGCATACTTTCAAAATATATGGAGGTAGCAGATATGCGTTTGTTCGCAGTCATAAA 3507895 Query 127446 TCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTT 127505 || || || | || || || ||||| | || | ||||| || | | | || |||| Sbjct 3507894 ACCATGTGTTAAATGACCACCATCGGGTAAGTCTAAACCCATAATGCGATCATGTGGTTG 3507835 Query 127506 AACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACAC 127565 | | |||||||| || ||||| || ||| || ||||| |||||||||||| || Sbjct 3507834 ACACAGGCCAGTGTAAACCGCAAAATTTGCCGGGGAACCCGAATACGGTTGTACATTTAC 3507775 Query 127566 TCCCCATTCGGACTCG-TTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTT 127624 |||||||| || | || ||| || ||| || |||| ||||| || ||| Sbjct 3507774 GCCCCATTC-TTCTGGATTTAAACGAAAAGCTTCAAGTGCACGCTTTTGTGCAAGACGTT 3507716 Query 127625 CG-ATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAG 127683 || || | ||| || ||||| || || ||||| || ||||| || ||| |||||||||| Sbjct 3507715 CGCATTC-ATCAATGAACTCATTGCCGCCATAATAGCGCTTGCCAGGCATACCCTCCGAA 3507657 Query 127684 TACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTTTTCC 127743 || || ||| ||||| || |||| |||||| |||| | | || || || || || Sbjct 3507656 TATTTATTGTGTAGACATGAGCTCAAGCATTCCAGCACAGCGACAGATGTGAAATTCTCG 3507597 Query 127744 GATGCGATCAACTCTAAGCCTGCCCGTTGCCGATCGGCCTCTTGCTCTACGAGCGCATAC 127803 || |||| |||||||| | | ||| || | ||| || | || | ||| Sbjct 3507596 CTGGCAATCATTTCTAAGCCAACGCTTTGGCGTTTCTTTTCTGACTTGATGATGGTGTAC 3507537 Query 127804 AGCTCGGGATCGGTTTCGTAGA 127825 ||||| |||||| ||||| ||| Sbjct 3507536 AGCTCAGGATCGCTTTCGCAGA 3507515 >seq1080 Length=5474809 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 50183 ACCGGAGCCGATTTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACT 50242 || || || ||| | | |||||||| |||||||||||||||| ||||| | ||||| Sbjct 2783814 ACGGGCGCGGATGTTGCAATATTCGCTTCGTGCTTTGCCTACATCTCCGATATATCGACG 2783873 Query 50243 GTGGAGAATCGCACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCA 50302 || |||||||||| | || || ||| |||||| | ||| | ||| | |||||| Sbjct 2783874 CTGAAGAATCGCACCTTGCGGGTAACCATATTGGATATCTGCTATTTAAGCGCCATGCCA 2783933 Query 50303 ACCGGTGTGGC 50313 || |||||||| Sbjct 2783934 ACGGGTGTGGC 2783944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741042470588560