Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq1310 96.9 2e-15
seq145 95.1 8e-15
seq454 93.3 3e-14
>seq1310
Length=3030561
Score = 96.9 bits (106), Expect = 2e-15
Identities = 157/222 (71%), Gaps = 8/222 (4%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||||||||| || | || ||||| ||||| ||||||||||| |||||| || |
Sbjct 645195 CGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACCA 645136
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273
|| |||||||| || || || || |||||||| || || | || || ||||||||
Sbjct 645135 TCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTG 645076
Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTC-GTTGGGTTGAACGTCCAGAGT 33330
|| | | | || ||| || ||| || ||||| | ||| | | || |||| |||
Sbjct 645075 TCTTGGATTTTGGC---TTTGACATTTTCGATGGTGTCAGATGGCTCG-ACCTCCAAAGT 645020
Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
|| || || || || || ||||| || ||||| ||||| ||
Sbjct 645019 GATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCATTTT 644978
>seq145
Length=1338480
Score = 95.1 bits (104), Expect = 8e-15
Identities = 162/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| | |||| ||| || || || || ||||| ||||| ||||| || ||||
Sbjct 898811 CCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCT 898870
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
||| | | || |||| ||| ||||| || ||||||||||| || || | |||
Sbjct 898871 AAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGA 898930
Query 33263 ATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTAC-TGTTTGAATCGTGTCGTTGGGTTG 33318
|| |||||||| || || | ||| || || || | | || || || |||||
Sbjct 898931 ATACCTTCTTTATCTTGAATTTTTGCC---TTAACATGCTCG-ATAGTATCCGAGGGTTC 898986
Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || ||||| || || || ||||| || ||||| ||||||||||||||
Sbjct 898987 GACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037
>seq454
Length=983520
Score = 93.3 bits (102), Expect = 3e-14
Identities = 140/198 (71%), Gaps = 6/198 (3%)
Strand=Plus/Plus
Query 33176 GACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTA 33235
|| |||||||| || ||||| ||||||||| || || || ||||| ||||| || |
Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313
Query 33236 AATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTT 33292
|| || |||||||| || || | ||| || ||||| || || | | | |||| |
Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCT---TC 254370
Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352
|| | | ||| || || || | ||| |||| || || ||||| || || | ||||
Sbjct 254371 ACATTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTT 254430
Query 33353 TTTACGAAAATTTGCATG 33370
|| |||||||||||||||
Sbjct 254431 TTAACGAAAATTTGCATG 254448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318770583505788
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |