Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1310 96.9 2e-15 seq145 95.1 8e-15 seq454 93.3 3e-14 >seq1310 Length=3030561 Score = 96.9 bits (106), Expect = 2e-15 Identities = 157/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || ||||| ||||| ||||||||||| |||||| || | Sbjct 645195 CGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACCA 645136 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || |||||||| || || || || |||||||| || || | || || |||||||| Sbjct 645135 TCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTG 645076 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTC-GTTGGGTTGAACGTCCAGAGT 33330 || | | | || ||| || ||| || ||||| | ||| | | || |||| ||| Sbjct 645075 TCTTGGATTTTGGC---TTTGACATTTTCGATGGTGTCAGATGGCTCG-ACCTCCAAAGT 645020 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || || || ||||| || ||||| ||||| || Sbjct 645019 GATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCATTTT 644978 >seq145 Length=1338480 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | |||| ||| || || || || ||||| ||||| ||||| || |||| Sbjct 898811 CCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCT 898870 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| | | || |||| ||| ||||| || ||||||||||| || || | ||| Sbjct 898871 AAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGA 898930 Query 33263 ATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTAC-TGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || || | ||| || || || | | || || || ||||| Sbjct 898931 ATACCTTCTTTATCTTGAATTTTTGCC---TTAACATGCTCG-ATAGTATCCGAGGGTTC 898986 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || || || ||||| || ||||| |||||||||||||| Sbjct 898987 GACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037 >seq454 Length=983520 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 33176 GACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTA 33235 || |||||||| || ||||| ||||||||| || || || ||||| ||||| || | Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313 Query 33236 AATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTT 33292 || || |||||||| || || | ||| || ||||| || || | | | |||| | Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCT---TC 254370 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || | | ||| || || || | ||| |||| || || ||||| || || | |||| Sbjct 254371 ACATTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTT 254430 Query 33353 TTTACGAAAATTTGCATG 33370 || ||||||||||||||| Sbjct 254431 TTAACGAAAATTTGCATG 254448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318770583505788