Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq145 91.5 1e-13 seq1310 89.7 4e-13 >seq145 Length=1338480 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||| || |||| || ||| ||||| |||||||| || ||| ||| |||| || Sbjct 898828 CACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCTAAAGTACGACCATCTTC 898887 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 || ||||||||| || || || || ||||| || || | || | ||||||||||||| Sbjct 898888 CAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGAATACCTTCTTTATCTTG 898947 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||||| || || | | |||||| | || || || || | || || || || Sbjct 898948 AATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGTGATGGTCTT 899007 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| || | || ||||| || |||||||| Sbjct 899008 ACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037 >seq1310 Length=3030561 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || || || ||| ||||| ||||| |||||| || || |||| Sbjct 645192 AACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACCATCT 645133 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || || || ||||| ||||| || || | || | ||||||||| ||| Sbjct 645132 TCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCT 645073 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||| |||||| | | | || || | ||||| || || | || || || Sbjct 645072 TGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTGATGGTC 645013 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || | || || ||||| || ||||| Sbjct 645012 TTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354769791123288