Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq145 91.5 1e-13
seq1310 89.7 4e-13
>seq145
Length=1338480
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971
||| || |||| || ||| ||||| |||||||| || ||| ||| |||| ||
Sbjct 898828 CACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCTAAAGTACGACCATCTTC 898887
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
|| ||||||||| || || || || ||||| || || | || | |||||||||||||
Sbjct 898888 CAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGAATACCTTCTTTATCTTG 898947
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
||||||| || || | | |||||| | || || || || | || || || ||
Sbjct 898948 AATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGTGATGGTCTT 899007
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||| || | || ||||| || ||||||||
Sbjct 899008 ACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037
>seq1310
Length=3030561
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
|||||||| || || || ||| ||||| ||||| |||||| || || ||||
Sbjct 645192 AACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACCATCT 645133
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
||||||||||| || || || ||||| ||||| || || | || | ||||||||| |||
Sbjct 645132 TCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCT 645073
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
||||| |||||| | | | || || | ||||| || || | || || ||
Sbjct 645072 TGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTGATGGTC 645013
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||| || | || || ||||| || |||||
Sbjct 645012 TTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354769791123288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |