Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq925 244 9e-60 >seq925 Length=3171676 Score = 244 bits (270), Expect = 9e-60 Identities = 464/670 (69%), Gaps = 10/670 (1%) Strand=Plus/Minus Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 ||| ||||| || |||| |||||||| | || |||||||| || | || ||| || | Sbjct 2021756 ACAATTCATACCAATTAGGTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTT 2021697 Query 13081 AACTGCTTC-GATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTG-AT-AGATG 13137 ||||||||| |||| || || | || |||||| || ||| | | || || | ||| Sbjct 2021696 AACTGCTTCAGATATG-ATTTCAATAAT-ACGTTCCCTGCTGG-GTTTCTGTATCAAATG 2021640 Query 13138 CTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT 13197 | ||||||| ||| || |||||||| || || || || || | || | ||| || Sbjct 2021639 TTGGAACATCAAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATT 2021580 Query 13198 TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGA 13257 || ||||||| |||||||| | || ||||| |||| |||||| || | ||||| Sbjct 2021579 GGAGAATGTTAAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACT 2021520 Query 13258 ACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT 13317 || ||| ||||| |||||||| || ||||| || || | | ||||||| | | Sbjct 2021519 GCCGCTAAAGAATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGC 2021460 Query 13318 ATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATAT 13376 | || ||||| ||||| | || || | ||||| |||| ||| Sbjct 2021459 AGACTTTGAAGAAATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGG-CATCG 2021401 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436 | || ||||| || || ||||| | | ||| || | ||| |||||| || || || | Sbjct 2021400 TCTCAATTGCATTGAACAAATAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTA 2021341 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 ||| ||||||||||||||| || | ||||||||| || ||||| ||||| || ||||| | Sbjct 2021340 ATATGCTATACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACC 2021281 Query 13497 TAGCCTCTGATACCTGAACTTCG-GAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATC 13555 ||||| | ||| |||||||| || | ||| | |||| | || ||||| || || || Sbjct 2021280 GCGCCTCCGTTACTTGAACTTCTTGACTGAAA-CGTTCTACCAAATTTTCATTTACAATA 2021222 Query 13556 CCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGAC 13615 || || || |||||||| || | || |||| || ||| | | ||||||| || | Sbjct 2021221 CCATCCGAGGCGGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTA 2021162 Query 13616 AACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAA 13675 | | |||||| ||||| || |||||||||||||| || |||||||||||||| Sbjct 2021161 AGTCGTGCCCAATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGAC 2021102 Query 13676 GCAACAGCCT 13685 || | |||| Sbjct 2021101 GCTTCTGCCT 2021092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430972913808012