Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq925 244 9e-60
>seq925
Length=3171676
Score = 244 bits (270), Expect = 9e-60
Identities = 464/670 (69%), Gaps = 10/670 (1%)
Strand=Plus/Minus
Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080
||| ||||| || |||| |||||||| | || |||||||| || | || ||| || |
Sbjct 2021756 ACAATTCATACCAATTAGGTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTT 2021697
Query 13081 AACTGCTTC-GATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTG-AT-AGATG 13137
||||||||| |||| || || | || |||||| || ||| | | || || | |||
Sbjct 2021696 AACTGCTTCAGATATG-ATTTCAATAAT-ACGTTCCCTGCTGG-GTTTCTGTATCAAATG 2021640
Query 13138 CTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT 13197
| ||||||| ||| || |||||||| || || || || || | || | ||| ||
Sbjct 2021639 TTGGAACATCAAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATT 2021580
Query 13198 TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGA 13257
|| ||||||| |||||||| | || ||||| |||| |||||| || | |||||
Sbjct 2021579 GGAGAATGTTAAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACT 2021520
Query 13258 ACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT 13317
|| ||| ||||| |||||||| || ||||| || || | | ||||||| | |
Sbjct 2021519 GCCGCTAAAGAATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGC 2021460
Query 13318 ATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATAT 13376
| || ||||| ||||| | || || | ||||| |||| |||
Sbjct 2021459 AGACTTTGAAGAAATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGG-CATCG 2021401
Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436
| || ||||| || || ||||| | | ||| || | ||| |||||| || || || |
Sbjct 2021400 TCTCAATTGCATTGAACAAATAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTA 2021341
Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496
||| ||||||||||||||| || | ||||||||| || ||||| ||||| || ||||| |
Sbjct 2021340 ATATGCTATACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACC 2021281
Query 13497 TAGCCTCTGATACCTGAACTTCG-GAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATC 13555
||||| | ||| |||||||| || | ||| | |||| | || ||||| || || ||
Sbjct 2021280 GCGCCTCCGTTACTTGAACTTCTTGACTGAAA-CGTTCTACCAAATTTTCATTTACAATA 2021222
Query 13556 CCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGAC 13615
|| || || |||||||| || | || |||| || ||| | | ||||||| || |
Sbjct 2021221 CCATCCGAGGCGGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTA 2021162
Query 13616 AACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAA 13675
| | |||||| ||||| || |||||||||||||| || ||||||||||||||
Sbjct 2021161 AGTCGTGCCCAATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGAC 2021102
Query 13676 GCAACAGCCT 13685
|| | ||||
Sbjct 2021101 GCTTCTGCCT 2021092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430972913808012
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |