Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq145 170 4e-37 seq925 158 3e-33 seq1310 134 3e-26 seq1509 84.2 5e-11 >seq145 Length=1338480 Score = 170 bits (188), Expect = 4e-37 Identities = 180/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 || ||| ||| ||||| || | || |||| ||||| ||||| || || || |||||| Sbjct 898802 TTCTTTGCTCCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTA 898861 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||||| || ||| | ||| ||||| ||||||||||| || ||||||| | |||||| Sbjct 898862 TAGTCAGCTAAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGA 898921 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 || || || || ||||||||||| ||||| ||||| || |||| || | ||||| Sbjct 898922 TCGGGGGGAATACCTTCTTTATCTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAG 898981 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| ||||| || || || |||||||| || || ||||| || || || |||||| Sbjct 898982 GGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCATT 899038 >seq925 Length=3171676 Score = 158 bits (174), Expect = 3e-33 Identities = 371/550 (67%), Gaps = 25/550 (5%) Strand=Plus/Plus Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGAT 268810 ||||| | || ||||||||||| || ||||| |||||| | || | || ||| ||| Sbjct 2021091 CAGGCAGAAGCGTCTTTTTGGACCGTGGAAGAGGTAGATTTATCCAAGGATTTAGATGAT 2021150 Query 268811 TGGAAAA-ATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGC 268869 ||| | | ||| || | |||||| ||| | || | | | || |||||||| Sbjct 2021151 TGGGCACGACTTACTGACA-ACGAAAGACATTTTGTTTCGCACGTATTAGCCTTTTTTGC 2021209 Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929 | |||||||| || || |||||| | ||||| ||| ||||||| || || | Sbjct 2021210 CGCCTCGGATGGTATTGTAAATGAAAATTTGGTAGAACGTTTCAGTCAAGAAGTTCAAGT 2021269 Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989 | || || | ||||| ||||| || || || ||||| |||||| | || ||||| || Sbjct 2021270 AACGGAGGCGCGGTGTTTCTACGGTTTTCAAATCGCTATGGAAAATGTGCACTCAGAAAT 2021329 Query 268990 GTACAGTCTATTAATAGATACTTATATAGATGATAACAACGA-AAAGAAA-AGACTATTT 269047 ||| || ||||||| || || ||||| ||| ||| ||| ||| ||||||||| Sbjct 2021330 GTATAGCATATTAATTGACACATATAT------TAAGGACGGCAAACAAAGAGACTATTT 2021383 Query 269048 TCTTCTATGAGA-----ACTATGGACTG-TGTGAGaaaaaaaTCTGAATGGGCTCTGAAA 269101 ||| ||| | || ||| ||| ||| | || |||| ||||| ||| Sbjct 2021384 G-TTCAATGCAATTGAGACGATGC-CTGCTGTTAAGCGTAAGGCTGATTGGGCGCTGGCT 2021441 Query 269102 TGGATA-----AACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAG 269156 ||||| || | || | || || ||| | || |||| ||||||||||| | Sbjct 2021442 TGGATTTCTTCAAAGTCTGCAAACTTT--GGTGAACGTATAATTGCATTTGCCGCTGTTG 2021499 Query 269157 AAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTA 269216 |||| ||||||||| || |||||| | ||||||||| | |||||| | || | | Sbjct 2021500 AAGGCATATTCTTTAGCGGCAGTTTTGCATCAATCTTTTGGCTTAAGAAACGTGGTTTAA 2021559 Query 269217 TGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACT 269276 |||| || ||||| ||||| || || ||||| | ||||| |||||||| || || | Sbjct 2021560 TGCCGGGCTTAACATTCTCCAATGAGTTGATCTCACGTGACGAGGGTTTACATTGTGATT 2021619 Query 269277 TCGCTTGTTT 269286 |||| ||||| Sbjct 2021620 TCGCGTGTTT 2021629 >seq1310 Length=3030561 Score = 134 bits (148), Expect = 3e-26 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || ||||| || || || | ||| | ||| ||||| | |||||| || Sbjct 645177 GTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACCATCTTCCAATTGTTTGCCG 645118 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | |||||||| || || || |||||||| || || || || ||||| Sbjct 645117 GCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTGGCTTTG 645058 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || || || ||||| | || || ||||||||||| |||||| Sbjct 645057 ACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTGATGGTCTTACCAGTCAGTGTT 644998 Query 104543 TTTACAAATATCTGCATTTTGT 104564 || ||||| ||||||||||||| Sbjct 644997 TTGACAAAAATCTGCATTTTGT 644976 >seq1509 Length=4395057 Score = 84.2 bits (92), Expect = 5e-11 Identities = 131/183 (72%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 238590 CTATGGAATTCCGCCCAGATACAAATGGT--AAGACTAGGCAAAATGCATAGTTTCTTAC 238647 || |||||| | || ||||| ||| |||| | || |||||||||||| | || | | Sbjct 621948 CTTTGGAATGCTGCTCAGATGCAATTGGTTCACGA--AGGCAAAATGCACGGATTTCTGC 622005 Query 238648 GAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGAT 238707 ||||||||||||| ||||| ||| | |||||| | || ||| ||| || |||| | Sbjct 622006 GAATGTATTGGGCAAAAAAAATATTGGAATGGTCATCTTCACCAGAGGTGGC-CTTAAAA 622064 Query 238708 ATAG-TATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTA 238766 | | |||| || |||| ||||||||| || |||| | ||||| || || || || Sbjct 622065 ACCGCTATTCATTTGAATGATAAATACAGTCTTGACGCTCGAGATCCAAATGGCTATGTT 622124 Query 238767 GGT 238769 ||| Sbjct 622125 GGT 622127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151371757360648