Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq145 170 4e-37
seq925 158 3e-33
seq1310 134 3e-26
seq1509 84.2 5e-11
>seq145
Length=1338480
Score = 170 bits (188), Expect = 4e-37
Identities = 180/237 (76%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383
|| ||| ||| ||||| || | || |||| ||||| ||||| || || || ||||||
Sbjct 898802 TTCTTTGCTCCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTA 898861
Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443
||||||| || ||| | ||| ||||| ||||||||||| || ||||||| | ||||||
Sbjct 898862 TAGTCAGCTAAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGA 898921
Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503
|| || || || ||||||||||| ||||| ||||| || |||| || | |||||
Sbjct 898922 TCGGGGGGAATACCTTCTTTATCTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAG 898981
Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||||| ||||| || || || |||||||| || || ||||| || || || ||||||
Sbjct 898982 GGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCATT 899038
>seq925
Length=3171676
Score = 158 bits (174), Expect = 3e-33
Identities = 371/550 (67%), Gaps = 25/550 (5%)
Strand=Plus/Plus
Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGAT 268810
||||| | || ||||||||||| || ||||| |||||| | || | || ||| |||
Sbjct 2021091 CAGGCAGAAGCGTCTTTTTGGACCGTGGAAGAGGTAGATTTATCCAAGGATTTAGATGAT 2021150
Query 268811 TGGAAAA-ATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGC 268869
||| | | ||| || | |||||| ||| | || | | | || ||||||||
Sbjct 2021151 TGGGCACGACTTACTGACA-ACGAAAGACATTTTGTTTCGCACGTATTAGCCTTTTTTGC 2021209
Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929
| |||||||| || || |||||| | ||||| ||| ||||||| || || |
Sbjct 2021210 CGCCTCGGATGGTATTGTAAATGAAAATTTGGTAGAACGTTTCAGTCAAGAAGTTCAAGT 2021269
Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989
| || || | ||||| ||||| || || || ||||| |||||| | || ||||| ||
Sbjct 2021270 AACGGAGGCGCGGTGTTTCTACGGTTTTCAAATCGCTATGGAAAATGTGCACTCAGAAAT 2021329
Query 268990 GTACAGTCTATTAATAGATACTTATATAGATGATAACAACGA-AAAGAAA-AGACTATTT 269047
||| || ||||||| || || ||||| ||| ||| ||| ||| |||||||||
Sbjct 2021330 GTATAGCATATTAATTGACACATATAT------TAAGGACGGCAAACAAAGAGACTATTT 2021383
Query 269048 TCTTCTATGAGA-----ACTATGGACTG-TGTGAGaaaaaaaTCTGAATGGGCTCTGAAA 269101
||| ||| | || ||| ||| ||| | || |||| ||||| |||
Sbjct 2021384 G-TTCAATGCAATTGAGACGATGC-CTGCTGTTAAGCGTAAGGCTGATTGGGCGCTGGCT 2021441
Query 269102 TGGATA-----AACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAG 269156
||||| || | || | || || ||| | || |||| ||||||||||| |
Sbjct 2021442 TGGATTTCTTCAAAGTCTGCAAACTTT--GGTGAACGTATAATTGCATTTGCCGCTGTTG 2021499
Query 269157 AAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTA 269216
|||| ||||||||| || |||||| | ||||||||| | |||||| | || | |
Sbjct 2021500 AAGGCATATTCTTTAGCGGCAGTTTTGCATCAATCTTTTGGCTTAAGAAACGTGGTTTAA 2021559
Query 269217 TGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACT 269276
|||| || ||||| ||||| || || ||||| | ||||| |||||||| || || |
Sbjct 2021560 TGCCGGGCTTAACATTCTCCAATGAGTTGATCTCACGTGACGAGGGTTTACATTGTGATT 2021619
Query 269277 TCGCTTGTTT 269286
|||| |||||
Sbjct 2021620 TCGCGTGTTT 2021629
>seq1310
Length=3030561
Score = 134 bits (148), Expect = 3e-26
Identities = 151/202 (75%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || || ||||| || || || | ||| | ||| ||||| | |||||| ||
Sbjct 645177 GTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACCATCTTCCAATTGTTTGCCG 645118
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | |||||||| || || || |||||||| || || || || |||||
Sbjct 645117 GCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTGGCTTTG 645058
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||||||| | ||| || || || ||||| | || || ||||||||||| ||||||
Sbjct 645057 ACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTGATGGTCTTACCAGTCAGTGTT 644998
Query 104543 TTTACAAATATCTGCATTTTGT 104564
|| ||||| |||||||||||||
Sbjct 644997 TTGACAAAAATCTGCATTTTGT 644976
>seq1509
Length=4395057
Score = 84.2 bits (92), Expect = 5e-11
Identities = 131/183 (72%), Gaps = 6/183 (3%)
Strand=Plus/Plus
Query 238590 CTATGGAATTCCGCCCAGATACAAATGGT--AAGACTAGGCAAAATGCATAGTTTCTTAC 238647
|| |||||| | || ||||| ||| |||| | || |||||||||||| | || | |
Sbjct 621948 CTTTGGAATGCTGCTCAGATGCAATTGGTTCACGA--AGGCAAAATGCACGGATTTCTGC 622005
Query 238648 GAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGAT 238707
||||||||||||| ||||| ||| | |||||| | || ||| ||| || |||| |
Sbjct 622006 GAATGTATTGGGCAAAAAAAATATTGGAATGGTCATCTTCACCAGAGGTGGC-CTTAAAA 622064
Query 238708 ATAG-TATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTA 238766
| | |||| || |||| ||||||||| || |||| | ||||| || || || ||
Sbjct 622065 ACCGCTATTCATTTGAATGATAAATACAGTCTTGACGCTCGAGATCCAAATGGCTATGTT 622124
Query 238767 GGT 238769
|||
Sbjct 622125 GGT 622127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151371757360648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |