Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1047 118 9e-22 >seq1047 Length=3070004 Score = 118 bits (130), Expect = 9e-22 Identities = 187/266 (70%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 5581 GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCC 5640 |||||| || |||| ||| ||||| || ||||| | |||| ||||||| |||| || Sbjct 1973244 GCGCTCACAAATCAACTGTGCTATGCGATCGCCGCGCATTACTTCGAAAT--TTGTATCC 1973301 Query 5641 GAAG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCG 5698 || || |||| || ||||||| ||| ||||||||||| | || | || || || Sbjct 1973302 GAGTGATTAAACAATACAACGCCCAAGTTACCGCGGTAGTCTTCATCCACGACACCGGCA 1973361 Query 5699 CCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCAC 5758 || || || ||||| | ||| || || | ||||||||| ||||| || || ||||| | Sbjct 1973362 CCAACATCTATGAAATTCTTCACAGCTAAGCCGGAGCGCGGAGCGACACGTCCGTAAGAT 1973421 Query 5759 CCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACTCGCCGACCGCCCGCAGGGACG 5818 || || || | ||| | ||||| |||||| ||| || ||| | ||| || || Sbjct 1973422 CCTTCAGGCACCTGCACCTGCAAGTCCGTTTTCACAACAGCTTTACCACGCGCTGGAACT 1973481 Query 5819 ATGCAGTCGCAAGCGCTGCAGAGGTC 5844 || | || |||||||||| | ||| Sbjct 1973482 ATCAAATCATAAGCGCTGCACAAGTC 1973507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430044934233872