Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq454 86.0 5e-12
seq1310 82.4 6e-11
>seq454
Length=983520
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|||||||| | | || ||| ||||| || || |||||||| |||||||| || |
Sbjct 253510 CCTCCGCGAAGACGTAGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAT 253569
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
||| || | || |||||||||||||| || |||| |||||||| ||||| ||
Sbjct 253570 AATGTACGTCCATCTTCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGG 253629
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| || ||||||||| || || ||| | | | | |||||||| | | ||
Sbjct 253630 ATACCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACT 253689
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || ||||| || || || | ||| || || ||||| |||||
Sbjct 253690 TCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736
>seq1310
Length=3030561
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || |||| | ||||| || ||||| || ||||||||| || |||||||| |
Sbjct 645208 ACCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGA 645149
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || | || |||| || || ||| || | || ||||| || ||||| ||
Sbjct 645148 CAAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGG 645089
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| || ||| ||||| ||||| |||| | | ||||| || | | |||
Sbjct 645088 GATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGAC 645029
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || ||||| ||||| || || ||||| ||||||||||||||
Sbjct 645028 CTCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421241927997806
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |