Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq969 134 2e-26 seq1113 91.5 2e-13 seq1387 84.2 3e-11 >seq969 Length=5813909 Score = 134 bits (148), Expect = 2e-26 Identities = 301/445 (68%), Gaps = 14/445 (3%) Strand=Plus/Plus Query 6802 CGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGC 6861 || |||| ||||||| ||| | || ||||| | || |||||||| ||||| || Sbjct 2585448 CGGGTTATTTGTTCTGTTAGCGGTTCAATATGCGTTTTGTAGATATGAGCGTCTCCAAGA 2585507 Query 6862 GTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAAT 6921 ||||| | || |||||||| | || | || ||||| | || || | ||| Sbjct 2585508 GTATGCACGAAGTCACCTGGACGAAGATTAGTTATATGTGCAATCATGTAGGTAAGTAAA 2585567 Query 6922 GCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACAT 6981 | ||| ||||| | || || ||||| || ||||||||||| || | ||| || || Sbjct 2585568 GAATACGAAGCAATGTTGAACGGTACGCCCAATCCCATATCGGCGCTACGTTGGTACAAT 2585627 Query 6982 TGACAAGATAAAATATTGTCTATAGCATAAAATTGACACAATACA-TGACATGGAGGTAA 7040 ||||| || | || | | | ||||||| | ||| ||| ||||| || ||||| Sbjct 2585628 TGACAGGACAGCTCTCCGTTTGCAACGAAAAATTG-CGCAAGACAATGACAAGGTGGTAA 2585686 Query 7041 AACAGCCTGATCT---ATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATT 7097 ||| ||| |||||| |||||||| |||| ||||| || | || ||||| Sbjct 2585687 C---GCCATTTCTGGGATATCAACGGGATTCCATGCAGACATTATTATTCTTCGGTCATT 2585743 Query 7098 TGGATTTGTTTTTAATTTTGTTATAATTATTTGT---AATTGATCTATACCCTGACCTTC 7154 || || |||||| || ||| | |||| |||| | ||||||||| || | ||| | Sbjct 2585744 AGGGTT-GTTTTTGATAGTGTCA--ATTACTTGTTGAAGTTGATCTATGCCTTCACCCTT 2585800 Query 7155 ATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAAT 7214 ||||| | |||| | || || || |||||||| | ||| ||||| || |||| Sbjct 2585801 GTAATTTTCCTTACAAGTACGGTATTTGGCACCAAAATGACGCCACTGAAAACCGTAAAC 2585860 Query 7215 AGGACCTAAATCACCTTCTTCACGA 7239 ||| || ||||| |||||||||||| Sbjct 2585861 AGGCCCCAAATCGCCTTCTTCACGA 2585885 >seq1113 Length=4038739 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 164495 AAAAATTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTA 164554 || |||| || ||||| || | ||||| || || ||| ||||||| |||||| ||||| Sbjct 208186 AACAATTGGGTTGTAAGCACGTCAAAGGTATATTGTTATATGGACCACCTGGTACCGGTA 208127 Query 164555 AAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTG 164611 | || || ||||| || |||| || | ||||| || || || ||||||| Sbjct 208126 AGACCTTGATGGCACGTCAAATTGG-CACTATGTTAAACGCACGTGAGCCA--AAAATTG 208070 Query 164612 TTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGT 164671 ||||||| || | ||||| |||| || || ||||| || ||||| ||| | ||| Sbjct 208069 TTAATGGCCCACAGATATTGGACAAGTACGTTGGTGAATCGGAAGCAAATATAAGACGAC 208010 Query 164672 TGTTTCAGGAGGCTGAAGAAGAACAAAAGA 164701 | ||| |||||||| || ||| |||||| Sbjct 208009 TCTTTGCCGAGGCTGAGGAGGAAGAAAAGA 207980 >seq1387 Length=2789183 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 19355 ATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATG 19414 ||||| |||| ||||| ||||||||||| | | ||||| || ||||||||||| Sbjct 1027631 ATACCACAAATTGGTGACAAGTTTGCTTCACGTCACGGACAAAAGGGTACATGTGGTATC 1027572 Query 19415 ATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATT 19474 ||||| || ||||||||| | || || || || | | || ||| |||||||| Sbjct 1027571 CAATATCGACAGGAAGATATGGCCTTCACATGCGAGGGCTTGGCACCAGATATTATTATT 1027512 Query 19475 AACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||||| || ||| ||||| ||| ||||| Sbjct 1027511 AACCCTCACGCTATTCCATCTCGTATGAC 1027483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595858548189600