Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq1620 82.4 4e-11 seq1 82.4 4e-11 >seq1620 Length=2344739 Score = 82.4 bits (90), Expect = 4e-11 Identities = 184/274 (67%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 3875 GGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAA 3934 || || |||||| | ||||| || || || || || ||||| |||||||||||||| || Sbjct 1985212 GGCGTTCATTTTGTAATGGCAGATGGCGGATTTTCAGTTGAAGGTCAAGAAAATATCCAG 1985153 Query 3935 GAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGA 3994 ||||| | || || | | ||| |||| || ||| | | || | | || | || Sbjct 1985152 GAAATACTCTCAAAGCAACTATATCTGTGCCAGTGTCTGACAGCTCTCAAAATACTTAGA 1985093 Query 3995 ATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTA 4054 || |||| || | || ||| | || || |||| || ||||||||| || | Sbjct 1985092 GTTAATGGTAGTTTTCTTTGCAAGATGTTTGACTTATTCACCCCTTTTAGTATAGGACTT 1985033 Query 4055 GTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTCATCGC-- 4112 | ||||| ||||||| || |||| || || | |||||| ||||| || || || Sbjct 1985032 ATATATTTAATGTATAAATGTTTTGATAAAATATCTATTTTGAAACC-CA---ATAGCAG 1984977 Query 4113 --GACCGGCCAATTCTGAAAGATATTTGGTGTGT 4144 | || || ||||| || ||||| || || ||| Sbjct 1984976 TAGGCCTGCTAATTCGGAGAGATACTTAGTTTGT 1984943 >seq1 Length=10144477 Score = 82.4 bits (90), Expect = 4e-11 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 5947 GGTGGTAAAGACGCATGCCAAGGTGATTCGGGTGGCCCGTTAGTTG-TCGATAACCGCTT 6005 ||||| || || || || || |||||||| ||||| ||| | |||| ||||||||| || Sbjct 7759700 GGTGGCAAGGATGCCTGTCAGGGTGATTCCGGTGGTCCGCT-GTTGATCGATAACCAGTT 7759642 Query 6006 AGCTGGTATCGTGTCATGGGGTAATGGATGTG 6037 ||||||| | ||||| ||||||||||| |||| Sbjct 7759641 AGCTGGTGTAGTGTCGTGGGGTAATGGCTGTG 7759610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276547512882418