Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1354 123 1e-23 seq1157 122 5e-23 seq1 122 5e-23 seq1146 120 2e-22 seq1024 118 6e-22 seq1475 114 7e-21 >seq1354 Length=2824451 Score = 123 bits (136), Expect = 1e-23 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | |||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 549616 AAAAATTATATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 549557 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 549556 CTCTAACCAACTGAGCTAATGGGCC 549532 >seq1157 Length=4118346 Score = 122 bits (134), Expect = 5e-23 Identities = 84/95 (88%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 || |||||||||| || | |||||||||| |||||||||| ||||||||||||||| Sbjct 305386 AAATAATAAAAAACGAAGTAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 305445 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||||||| Sbjct 305446 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 305480 >seq1 Length=10144477 Score = 122 bits (134), Expect = 5e-23 Identities = 83/92 (90%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 7071176 ATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 7071117 Query 11514 ACTGAGCTAATGGGCC-GTCGACG--ATTGTG 11542 |||||||||||||||| ||||| | |||||| Sbjct 7071116 ACTGAGCTAATGGGCCAGTCGATGAAATTGTG 7071085 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 7066645 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 7066586 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 7066585 TGAGCTAATGGGCC 7066572 >seq1146 Length=4288032 Score = 120 bits (132), Expect = 2e-22 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||||| | ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 3236498 AAAAAAAAATCAGCT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 3236556 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||||||||| Sbjct 3236557 GACGCTCTAACCAACTGAGCTAATGGGCCG 3236586 Score = 120 bits (132), Expect = 2e-22 Identities = 90/104 (87%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 11429 AAATATAGAATT--AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 || |||| |||| || ||||||| ||||||||||| |||||||||| ||||||| Sbjct 3248324 AATTATA-AATTGAAAAAAAAAATTGTGTTGGCCCATGAGGGGATCGAACCCGCGACCTT 3248266 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 3248265 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 3248222 Score = 114 bits (126), Expect = 7e-21 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 3137747 AAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 3137806 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 3137807 AACTGAGCTAATGGGCC 3137823 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3142895 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3142954 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 3142955 TGAGCTAATGGGCC 3142968 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3143111 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3143170 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 3143171 TGAGCTAATGGGCC 3143184 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3144393 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3144452 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 3144453 TGAGCTAATGGGCC 3144466 >seq1024 Length=6080933 Score = 118 bits (130), Expect = 6e-22 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| | ||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 5218118 AAAATAATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGC 5218177 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 5218178 TCTAACCAACTGAGCTAATGGGCC 5218201 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5212490 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5212549 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 5212550 TGAGCTAATGGGCC 5212563 >seq1475 Length=10956678 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 10542360 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 10542301 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 10542300 CTGAGCTAATGGGCC 10542286 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261485444415256