Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq681 104 4e-18 seq1259 102 1e-17 seq1202 95.1 2e-15 seq1150 93.3 7e-15 seq1387 87.8 3e-13 seq1282 87.8 3e-13 >seq681 Length=1835 Score = 104 bits (114), Expect = 4e-18 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||| ||||||||| | |||||| | ||||| | |||||| || Sbjct 180 GATAACATCCAAGGTATCACAAAGCCAGCTGTTCGTCGTTTAGCTCGCCCTGGTGGCGTA 121 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAA 16566 || | | | ||||||||| |||||||| | |||||||||||| || Sbjct 120 AAACATATGTCTGGATTGACATATGAAGAAAATCGTGATGTTTTAAA 74 >seq1259 Length=35159 Score = 102 bits (112), Expect = 1e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||| | | | | ||||||||||||| |||| || |||||| | Sbjct 8088 GCTAAGCGTCATCGGAAAATGTTATGTGATAACATCCAAGATTTCACAAATCCAGCTGTT 8029 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | ||||| ||||| || || || ||| | |||||||||| |||||||| | | Sbjct 8028 CGTCGTTTAGCTCGCCGTGGGGGCGTAAAACGTATATCTGGATTGGCGTATGAAGAAAAT 7969 Query 16553 CGTGATGTTTTGAA 16566 |||| |||||| || Sbjct 7968 CGTGGTGTTTTAAA 7955 >seq1202 Length=44937 Score = 95.1 bits (104), Expect = 2e-15 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||| | | | | |||||||||||||| ||||| ||||||||| | Sbjct 518 GCTAAGCGTCATCGGAAAATGTTATGTGATAACATCCAAGGTATCACAAAGCCAGCTGTT 459 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTG 16537 |||||| | ||||| |||||||| || || ||| | ||||||||| Sbjct 458 CGTCGTTTAGCTCGCCGTGGTGGCGTAAAACGTATATCTGGATTG 414 >seq1150 Length=57772 Score = 93.3 bits (102), Expect = 7e-15 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||||| | | || || |||||||||| ||||| ||||||||||| Sbjct 24344 GCTAAGCGCCATCGCAAAGTGTTACGTCATTACATCCAAGGTATCACAAAGCCAGCTATT 24403 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | |||| ||| | || || ||| | ||||||||| | || ||||| | | Sbjct 24404 CGTCGTTTAACTCGCCGTTATATCGTAAAACGTATATCTGGATTGATATAAGAAGAAACT 24463 Query 16553 CGTGATGTTTTGAA 16566 |||| |||||| || Sbjct 24464 CGTGGTGTTTTAAA 24477 >seq1387 Length=2789183 Score = 87.8 bits (96), Expect = 3e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||||||||| || || ||||| || || || ||| | || || |||||||| Sbjct 827855 CGTGATAACATCCAAGGTATAACAAAGCCGGCCATTCGCCGTTTAGCCCGACGTGGTGGT 827914 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 || || ||| | ||||| ||| | ||||| || | ||||| ||||||||| Sbjct 827915 GTAAAACGTATTTCTGGCTTGATTTATGAGGAAACTCGTGGCGTTTTGAAG 827965 Score = 87.8 bits (96), Expect = 3e-13 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 16582 CGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCAT 16641 ||| || | ||||||| || ||| ||||| ||||| || ||||| ||||| ||| | || Sbjct 828091 CGTCATTCGTGATGCTGTCACCTACACCGAACACGCCAAGCGTAAAACTGTAACCGCTAT 828150 Query 16642 GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | || || || |||||||||||||| |||| | || |||||||| ||||| Sbjct 828151 GGACGTTGTTTACGCTTTGAAACGTCAAGGTCGTACCCTATACGGTTTTGGCGGTTAA 828208 >seq1282 Length=23135 Score = 87.8 bits (96), Expect = 3e-13 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 16439 CGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 |||||||||| | | |||| ||||||||||||| ||||| ||||||||||| ||| || Sbjct 16652 CGTCATCGCAAAGTTTTTCGTCATAACATCCAAGGTATCACAAAGCCAGCTATTCGTAGT 16711 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 | |||| ||| ||| || || || | |||| |||| | || |||| | ||||| | Sbjct 16712 TTAACTCGCCGTTATGGCGTAAAAGGTATATCTGAATTGATATAAAAAGAAACTCGTGGT 16771 Query 16559 GTTTTGAA 16566 |||| || Sbjct 16772 TTTTTAAA 16779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073548761558