Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_006659.1 Length=41573 Score E Sequences producing significant alignments: (Bits) Value seq563 109 1e-19 seq1134 100 8e-17 seq25 84.2 6e-12 >seq563 Length=1367420 Score = 109 bits (120), Expect = 1e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 39302 TCGTCCCGTTTCTGTGTAAACCTCGTATCTACAAAATCGTAATTTTCGGTAAATCGATAA 39361 |||||| ||||||||| ||||| ||||| ||||||||| || ||||| |||||| || Sbjct 372163 TCGTCCAATTTCTGTGTTAACCTAGTATCAGCAAAATCGTTATATTCGGGAAATCGTTAC 372104 Query 39362 AAACGTTTAGAGTTACTTAATTTTTATAAAAAGTTATAACTAATTCAAAATTTATGCTCT 39421 || | ||| |||||||| |||| ||||| ||| ||| | |||| ||| || | | | Sbjct 372103 AAGTTTCTAGGCTTACTTAACTTTTGTAAAAGGTTGTAATTGATTCGAAAATTTTACCTT 372044 Query 39422 TTATCAATCACCTTAAAAGAATTAAACATGATTTTTGCTATCTGCATCGATGCTTTGTTG 39481 || ||||| | || | |||| || || |||||||||||| |||| | | ||| Sbjct 372043 CCATTTATCACGTATAACTACTTAAGCAGGACTTTTGCTATCTGGGCCGATACCTAATTG 371984 Query 39482 TTATT 39486 || || Sbjct 371983 TTTTT 371979 >seq1134 Length=5665586 Score = 100 bits (110), Expect = 8e-17 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 39327 TATCTACAAAATCGTAATTTTCGGTAAATCGATAAAAACGTTTAGAGTTACTTAATTTTT 39386 ||| |||| |||||| ||||||| |||||| |||| | ||||| || ||| | ||| | Sbjct 291637 TATTTACATAATCGTGATTTTCGTAAAATCGGTAAATATGTTTATGGT-ACTGAGTTTCT 291579 Query 39387 ATAAAAAGTTATAACTAATTCAAAATTTATGCTCTTTATCAATCACCTTAAAAGAATTAA 39446 ||||||||||||| |||| |||| |||| ||| || ||||||||||| | ||| Sbjct 291578 GTAAAAAGTTATAATCAATTTAAAAGTTAT-ATCTCAATTTATCACCTTAAATTATCTAA 291520 Query 39447 ACATGATTTTTGCT 39460 ||||||||| |||| Sbjct 291519 ACATGATTTATGCT 291506 >seq25 Length=2170190 Score = 84.2 bits (92), Expect = 6e-12 Identities = 100/133 (75%), Gaps = 7/133 (5%) Strand=Plus/Plus Query 39320 AACCTCGTATCTACAAAATCGTAATTTTCGGTAAATCGATAAAAACGTTTAGAGTTACTT 39379 |||||| |||||| ||||||| || ||||| ||||||| |||||| |||||| | | || Sbjct 527113 AACCTCTTATCTAGAAAATCGCAAGATTCGGAAAATCGA-AAAAACTTTTAGAAT-ATTT 527170 Query 39380 AATTTTTATA-----AAAAGTTATAACTAATTCAAAATTTATGCTCTTTATCAATCACCT 39434 ||||||| || ||||||||||| | || ||| |||| |||| ||| |||| Sbjct 527171 AATTTTTGTATTGTTAAAAGTTATAATCAGTTGGAAAATTATACTCTCTATTTATCAAAA 527230 Query 39435 TAAAAGAATTAAA 39447 ||||| | | ||| Sbjct 527231 TAAAATACTAAAA 527243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132909149536020