Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_006661.1
Length=11186
Score E
Sequences producing significant alignments: (Bits) Value
seq1343 105 5e-19
seq551 104 2e-18
seq1134 98.7 7e-17
seq552 93.3 3e-15
seq1682 89.7 4e-14
seq1321 89.7 4e-14
seq1013 87.8 1e-13
seq200 86.0 4e-13
seq1146 78.8 7e-11
>seq1343
Length=3569655
Score = 105 bits (116), Expect = 5e-19
Identities = 126/173 (73%), Gaps = 3/173 (2%)
Strand=Plus/Minus
Query 5376 AAGGGGCTATTCATAAATTACGTAAGCATAATTTGGAGCATTTTATAANNNNNNNNNNNN 5435
||||| | || |||| || |||||||||||| ||||||||| ||
Sbjct 827623 AAGGGAGTTTTTATAA--TAAATAAGCATAATTTTCAGCATTTTACAATCCCCGCTCCCC 827566
Query 5436 NATGATAAGCATTAGTAAAATTTTCAACTGATACATCCACCCC-CCTCTGAAATCTTACG 5494
||||||| || || ||| ||||| | |||||| ||| || |||| || || ||
Sbjct 827565 CATGATAAACAGTAATAAGATTTTAAGCTGATAACTCCCTTCCTCCTCAAAATTCCAACT 827506
Query 5495 TAAGATATACATCAATTTTGGGCTTTCAATAAGTTAAAAAATATTTTTAATTT 5547
|||||||||||| ||||||| |||| ||||||||| ||||||||||||||||
Sbjct 827505 TAAGATATACATAAATTTTGAGCTTGAAATAAGTTACAAAATATTTTTAATTT 827453
Score = 84.2 bits (92), Expect = 2e-12
Identities = 129/181 (71%), Gaps = 11/181 (6%)
Strand=Plus/Plus
Query 6350 AAAACTGTGTGTGACATTATCGATGCAATTGAACTATCGATCGAGAATCATAGTAGAAAA 6409
|| || || | || |||||||||| ||| || |||||||| || | |||||
Sbjct 2252145 AATACAGTTTTTGTCATTATCGATAGAATCGAGTTATCGATCT-GACT-------GAAAA 2252196
Query 6410 GTAATTTAAGTTACCGACTACTAAAATAATTTAAAAATTTTGCTTACGTAAGATTTGTCT 6469
| |||||||||||||||||| || | |||||||| |||| | | | || |||| ||
Sbjct 2252197 CTGATTTAAGTTACCGACTACCGGAAAACTTTAAAAAATTTGATCAAGAAATATTTATCA 2252256
Query 6470 ACTAGCG-CCCTCCCCCCTAAGTAAGCATACATAGAGATTCATCTTGA--Tccccccccc 6526
|||| | || || || |||||||| ||| | ||| ||||| |||| ||||| | ||
Sbjct 2252257 CCTAGTGTCCTTCACCGCTAAGTAAACATTCCCAGATATTCAAATTGACTTCCCCTCTCC 2252316
Query 6527 c 6527
|
Sbjct 2252317 C 2252317
>seq551
Length=10453798
Score = 104 bits (114), Expect = 2e-18
Identities = 116/154 (75%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 6408 AAGTAATTTAAGTTACCGACTA-CTAAAATAATTTAAAAATTTTGCTTACGTAAGATTTG 6466
|| ||||||||||||||||||| | | || |||||||| ||| || |||||| || ||
Sbjct 981532 AATTAATTTAAGTTACCGACTATCGATAAATTTTTAAAAAATTTTCTAACGTAAAATGTG 981591
Query 6467 TCTACTAGCGCCCTCCCCCCTAAGTAAGCATACATAGAGATTCATCTTGATccccccccc 6526
||| |||| |||||| ||||| ||||||| | ||| || | || || || | |
Sbjct 981592 TCTCCTAGAGCCCTCGCCCCTTAGTAAGCTTTTATAAAGTTGCAGTGTGCCATCCATCGC 981651
Query 6527 cTAATGAGCGCTTACGTAATTTATGAACAGCCCC 6560
|| || || ||| |||||||||||| |||| |||
Sbjct 981652 CTCATAAGTGCTGACGTAATTTATGGACAGGCCC 981685
>seq1134
Length=5665586
Score = 98.7 bits (108), Expect = 7e-17
Identities = 91/116 (78%), Gaps = 7/116 (6%)
Strand=Plus/Plus
Query 6399 ATAGTAGAAAAGTAATTTAAGTTACCGACTACTAAAATAATTTAAAAATTTTGCTTACGT 6458
|||||| |||||||||||||| |||||||| |||| |||||||| ||| |
Sbjct 3263532 ATAGTAAAAAAGTAATTTAAGCCACCGACTATCAAAA-------AAAATTTTACTTCCCA 3263584
Query 6459 AAGATTTGTCTACTAGCGCCCTCCCCCCTAAGTAAGCATACATAGAGATTCATCTT 6514
|| |||||| | ||||||||| | | ||||||||||||| |||| |||||||| ||
Sbjct 3263585 AAAATTTGTTTCCTAGCGCCCCCTCTCCTAAGTAAGCATGCATAAAGATTCATTTT 3263640
>seq552
Length=1287295
Score = 93.3 bits (102), Expect = 3e-15
Identities = 114/153 (75%), Gaps = 7/153 (5%)
Strand=Plus/Plus
Query 6364 CATTATCGATGCAATTGAACTATCGATCGAGAATCATAGTAGAAAAGTAATTTAAGTTAC 6423
|||| ||||| ||| | |||||||| | | ||||||| ||| |||||| |
Sbjct 196556 CATTTTCGATAGAATCAAGTTATCGATCTTCATTAATAGTAGCTAAGGAATTTA-----C 196610
Query 6424 CGACTACTAAAATAATTTAAAAATTTTGCTTACGTAAGATTTGTCTACTAGCGCCCTCCC 6483
|||||| ||| |||||||||| | || |||||||||||||| |||||| ||||||
Sbjct 196611 CGACTATCGAAA-AATTTAAAAAAAATTCTGCCGTAAGATTTGTCTCCTAGCGTCCTCCC 196669
Query 6484 CCCTAAGTAAGCATACATAGAGATTCATCTTGA 6516
|| |||||||||| ||| ||||||| ||||
Sbjct 196670 CCAAAAGTAAGCATGAATA-AGATTCAATTTGA 196701
>seq1682
Length=2498
Score = 89.7 bits (98), Expect = 4e-14
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 5476 CCCCCTCTGAAATCTTACGTAAGATATACATCAATTTTGGGCTTTCAATAAGTTAAAAAA 5535
|||||||| ||||||||||| ||||||||| |||||| |||| ||||||||| ||||
Sbjct 693 CCCCCTCTAAAATCTTACGTCAGATATACAAGAATTTTAAGCTTCAAATAAGTTACAAAA 634
Query 5536 TATTTTTAATTT 5547
||||||||||||
Sbjct 633 TATTTTTAATTT 622
>seq1321
Length=1221928
Score = 89.7 bits (98), Expect = 4e-14
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 5476 CCCCCTCTGAAATCTTACGTAAGATATACATCAATTTTGGGCTTTCAATAAGTTAAAAAA 5535
|||||||| ||||||||||| ||||||||| |||||| |||| ||||||||| ||||
Sbjct 927337 CCCCCTCTAAAATCTTACGTCAGATATACAAGAATTTTAAGCTTCAAATAAGTTACAAAA 927278
Query 5536 TATTTTTAATTT 5547
||||||||||||
Sbjct 927277 TATTTTTAATTT 927266
>seq1013
Length=4954033
Score = 87.8 bits (96), Expect = 1e-13
Identities = 79/96 (82%), Gaps = 4/96 (4%)
Strand=Plus/Plus
Query 6396 ATCATAGTAGAAAA--GTAATTTAAGTTACCGACTACTAAAATAATTTAAAAATTTTGCT 6453
||||||||| |||| |||| ||||||||||||||||| || ||||| |||| ||||||
Sbjct 18493 ATCATAGTAAAAAAAAGTAAATTAAGTTACCGACTACTGGAAAAATTTGAAAA-TTTGCT 18551
Query 6454 TACGTAAGATTTGTCTACTAGCGCCC-TCCCCCCTA 6488
|||| | ||||| | ||||||||| ||||| |||
Sbjct 18552 TACGCCAAATTTGATTCCTAGCGCCCATCCCCTCTA 18587
>seq200
Length=1287235
Score = 86.0 bits (94), Expect = 4e-13
Identities = 86/108 (80%), Gaps = 8/108 (7%)
Strand=Plus/Minus
Query 6396 ATCATAGTAGAAAAGTAATTTAAGTTACCGACTA-CTAAAA--TAATTTAAAAATTTTGC 6452
|| |||||| | |||||||||||||||||| ||| |||||| ||| |||| |||||
Sbjct 136243 ATAATAGTATACAAGTAATTTAAGTTACCGGCTACCTAAAACTTAAATTAA----TTTGC 136188
Query 6453 TTACGTAAGATTTGTCTACTAGCGCCCTCCCCCCTAAGTAAGCATACA 6500
||||||| |||||| | |||| |||| ||| ||||||||||| ||
Sbjct 136187 ATACGTAAAATTTGTTTGGTAGCTCCCT-ACCCTTAAGTAAGCATGCA 136141
>seq1146
Length=4288032
Score = 78.8 bits (86), Expect = 7e-11
Identities = 87/111 (78%), Gaps = 4/111 (4%)
Strand=Plus/Minus
Query 5438 TGATAAGCATTAGTAAAATTTTCAACTGATACATCCACCCCC-CTCTGAAATCTTACGTA 5496
||||||| | ||||| || || | || ||| |||| | ||| |||| ||| ||||||||
Sbjct 440069 TGATAAGTAATAGTAGGATCTT-AGCTAATA-ATCCCCACCCGCTCTAAAACCTTACGTA 440012
Query 5497 AGATATACATCAATTTTGGGCTTTCAATAAGTTAAAAAATATTTTTAATTT 5547
||| ||||| ||||||| | || || |||||| |||||||||||||||
Sbjct 440011 AGACATACAACAATTTTAAG-TTCAAAAAAGTTATTAAATATTTTTAATTT 439962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35679275071600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |