Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_006661.1 Length=11186 Score E Sequences producing significant alignments: (Bits) Value seq1343 105 5e-19 seq551 104 2e-18 seq1134 98.7 7e-17 seq552 93.3 3e-15 seq1682 89.7 4e-14 seq1321 89.7 4e-14 seq1013 87.8 1e-13 seq200 86.0 4e-13 seq1146 78.8 7e-11 >seq1343 Length=3569655 Score = 105 bits (116), Expect = 5e-19 Identities = 126/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 5376 AAGGGGCTATTCATAAATTACGTAAGCATAATTTGGAGCATTTTATAANNNNNNNNNNNN 5435 ||||| | || |||| || |||||||||||| ||||||||| || Sbjct 827623 AAGGGAGTTTTTATAA--TAAATAAGCATAATTTTCAGCATTTTACAATCCCCGCTCCCC 827566 Query 5436 NATGATAAGCATTAGTAAAATTTTCAACTGATACATCCACCCC-CCTCTGAAATCTTACG 5494 ||||||| || || ||| ||||| | |||||| ||| || |||| || || || Sbjct 827565 CATGATAAACAGTAATAAGATTTTAAGCTGATAACTCCCTTCCTCCTCAAAATTCCAACT 827506 Query 5495 TAAGATATACATCAATTTTGGGCTTTCAATAAGTTAAAAAATATTTTTAATTT 5547 |||||||||||| ||||||| |||| ||||||||| |||||||||||||||| Sbjct 827505 TAAGATATACATAAATTTTGAGCTTGAAATAAGTTACAAAATATTTTTAATTT 827453 Score = 84.2 bits (92), Expect = 2e-12 Identities = 129/181 (71%), Gaps = 11/181 (6%) Strand=Plus/Plus Query 6350 AAAACTGTGTGTGACATTATCGATGCAATTGAACTATCGATCGAGAATCATAGTAGAAAA 6409 || || || | || |||||||||| ||| || |||||||| || | ||||| Sbjct 2252145 AATACAGTTTTTGTCATTATCGATAGAATCGAGTTATCGATCT-GACT-------GAAAA 2252196 Query 6410 GTAATTTAAGTTACCGACTACTAAAATAATTTAAAAATTTTGCTTACGTAAGATTTGTCT 6469 | |||||||||||||||||| || | |||||||| |||| | | | || |||| || Sbjct 2252197 CTGATTTAAGTTACCGACTACCGGAAAACTTTAAAAAATTTGATCAAGAAATATTTATCA 2252256 Query 6470 ACTAGCG-CCCTCCCCCCTAAGTAAGCATACATAGAGATTCATCTTGA--Tccccccccc 6526 |||| | || || || |||||||| ||| | ||| ||||| |||| ||||| | || Sbjct 2252257 CCTAGTGTCCTTCACCGCTAAGTAAACATTCCCAGATATTCAAATTGACTTCCCCTCTCC 2252316 Query 6527 c 6527 | Sbjct 2252317 C 2252317 >seq551 Length=10453798 Score = 104 bits (114), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 6408 AAGTAATTTAAGTTACCGACTA-CTAAAATAATTTAAAAATTTTGCTTACGTAAGATTTG 6466 || ||||||||||||||||||| | | || |||||||| ||| || |||||| || || Sbjct 981532 AATTAATTTAAGTTACCGACTATCGATAAATTTTTAAAAAATTTTCTAACGTAAAATGTG 981591 Query 6467 TCTACTAGCGCCCTCCCCCCTAAGTAAGCATACATAGAGATTCATCTTGATccccccccc 6526 ||| |||| |||||| ||||| ||||||| | ||| || | || || || | | Sbjct 981592 TCTCCTAGAGCCCTCGCCCCTTAGTAAGCTTTTATAAAGTTGCAGTGTGCCATCCATCGC 981651 Query 6527 cTAATGAGCGCTTACGTAATTTATGAACAGCCCC 6560 || || || ||| |||||||||||| |||| ||| Sbjct 981652 CTCATAAGTGCTGACGTAATTTATGGACAGGCCC 981685 >seq1134 Length=5665586 Score = 98.7 bits (108), Expect = 7e-17 Identities = 91/116 (78%), Gaps = 7/116 (6%) Strand=Plus/Plus Query 6399 ATAGTAGAAAAGTAATTTAAGTTACCGACTACTAAAATAATTTAAAAATTTTGCTTACGT 6458 |||||| |||||||||||||| |||||||| |||| |||||||| ||| | Sbjct 3263532 ATAGTAAAAAAGTAATTTAAGCCACCGACTATCAAAA-------AAAATTTTACTTCCCA 3263584 Query 6459 AAGATTTGTCTACTAGCGCCCTCCCCCCTAAGTAAGCATACATAGAGATTCATCTT 6514 || |||||| | ||||||||| | | ||||||||||||| |||| |||||||| || Sbjct 3263585 AAAATTTGTTTCCTAGCGCCCCCTCTCCTAAGTAAGCATGCATAAAGATTCATTTT 3263640 >seq552 Length=1287295 Score = 93.3 bits (102), Expect = 3e-15 Identities = 114/153 (75%), Gaps = 7/153 (5%) Strand=Plus/Plus Query 6364 CATTATCGATGCAATTGAACTATCGATCGAGAATCATAGTAGAAAAGTAATTTAAGTTAC 6423 |||| ||||| ||| | |||||||| | | ||||||| ||| |||||| | Sbjct 196556 CATTTTCGATAGAATCAAGTTATCGATCTTCATTAATAGTAGCTAAGGAATTTA-----C 196610 Query 6424 CGACTACTAAAATAATTTAAAAATTTTGCTTACGTAAGATTTGTCTACTAGCGCCCTCCC 6483 |||||| ||| |||||||||| | || |||||||||||||| |||||| |||||| Sbjct 196611 CGACTATCGAAA-AATTTAAAAAAAATTCTGCCGTAAGATTTGTCTCCTAGCGTCCTCCC 196669 Query 6484 CCCTAAGTAAGCATACATAGAGATTCATCTTGA 6516 || |||||||||| ||| ||||||| |||| Sbjct 196670 CCAAAAGTAAGCATGAATA-AGATTCAATTTGA 196701 >seq1682 Length=2498 Score = 89.7 bits (98), Expect = 4e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 5476 CCCCCTCTGAAATCTTACGTAAGATATACATCAATTTTGGGCTTTCAATAAGTTAAAAAA 5535 |||||||| ||||||||||| ||||||||| |||||| |||| ||||||||| |||| Sbjct 693 CCCCCTCTAAAATCTTACGTCAGATATACAAGAATTTTAAGCTTCAAATAAGTTACAAAA 634 Query 5536 TATTTTTAATTT 5547 |||||||||||| Sbjct 633 TATTTTTAATTT 622 >seq1321 Length=1221928 Score = 89.7 bits (98), Expect = 4e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 5476 CCCCCTCTGAAATCTTACGTAAGATATACATCAATTTTGGGCTTTCAATAAGTTAAAAAA 5535 |||||||| ||||||||||| ||||||||| |||||| |||| ||||||||| |||| Sbjct 927337 CCCCCTCTAAAATCTTACGTCAGATATACAAGAATTTTAAGCTTCAAATAAGTTACAAAA 927278 Query 5536 TATTTTTAATTT 5547 |||||||||||| Sbjct 927277 TATTTTTAATTT 927266 >seq1013 Length=4954033 Score = 87.8 bits (96), Expect = 1e-13 Identities = 79/96 (82%), Gaps = 4/96 (4%) Strand=Plus/Plus Query 6396 ATCATAGTAGAAAA--GTAATTTAAGTTACCGACTACTAAAATAATTTAAAAATTTTGCT 6453 ||||||||| |||| |||| ||||||||||||||||| || ||||| |||| |||||| Sbjct 18493 ATCATAGTAAAAAAAAGTAAATTAAGTTACCGACTACTGGAAAAATTTGAAAA-TTTGCT 18551 Query 6454 TACGTAAGATTTGTCTACTAGCGCCC-TCCCCCCTA 6488 |||| | ||||| | ||||||||| ||||| ||| Sbjct 18552 TACGCCAAATTTGATTCCTAGCGCCCATCCCCTCTA 18587 >seq200 Length=1287235 Score = 86.0 bits (94), Expect = 4e-13 Identities = 86/108 (80%), Gaps = 8/108 (7%) Strand=Plus/Minus Query 6396 ATCATAGTAGAAAAGTAATTTAAGTTACCGACTA-CTAAAA--TAATTTAAAAATTTTGC 6452 || |||||| | |||||||||||||||||| ||| |||||| ||| |||| ||||| Sbjct 136243 ATAATAGTATACAAGTAATTTAAGTTACCGGCTACCTAAAACTTAAATTAA----TTTGC 136188 Query 6453 TTACGTAAGATTTGTCTACTAGCGCCCTCCCCCCTAAGTAAGCATACA 6500 ||||||| |||||| | |||| |||| ||| ||||||||||| || Sbjct 136187 ATACGTAAAATTTGTTTGGTAGCTCCCT-ACCCTTAAGTAAGCATGCA 136141 >seq1146 Length=4288032 Score = 78.8 bits (86), Expect = 7e-11 Identities = 87/111 (78%), Gaps = 4/111 (4%) Strand=Plus/Minus Query 5438 TGATAAGCATTAGTAAAATTTTCAACTGATACATCCACCCCC-CTCTGAAATCTTACGTA 5496 ||||||| | ||||| || || | || ||| |||| | ||| |||| ||| |||||||| Sbjct 440069 TGATAAGTAATAGTAGGATCTT-AGCTAATA-ATCCCCACCCGCTCTAAAACCTTACGTA 440012 Query 5497 AGATATACATCAATTTTGGGCTTTCAATAAGTTAAAAAATATTTTTAATTT 5547 ||| ||||| ||||||| | || || |||||| ||||||||||||||| Sbjct 440011 AGACATACAACAATTTTAAG-TTCAAAAAAGTTATTAAATATTTTTAATTT 439962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35679275071600