Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq925 190 2e-43 >seq925 Length=3171676 Score = 190 bits (210), Expect = 2e-43 Identities = 459/693 (66%), Gaps = 12/693 (2%) Strand=Plus/Minus Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369 ||| ||||| ||||| ||||| | |||| | |||||||||||| || | ||||| Sbjct 2021792 ATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAGGTTTAC 2021733 Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429 ||| | || | ||| || || || ||| || || |||||| || || | || Sbjct 2021732 AGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGATTTCAAT 2021673 Query 21430 TATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACA 21489 || | | || || | | || |||| ||||||||||| || |||||||| Sbjct 2021672 AATACGTTCCCTGCTGGGTTTCTGTATCAAATGTTGGAACATCAAACACGCGAAATCACA 2021613 Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549 ||| ||||| || || | || || ||||| || |||||||| || |||||||| || Sbjct 2021612 ATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCATTAAACC 2021553 Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCCTCAACG 21607 | || || | |||||| ||||| ||||| ||| || |||||| ||||| ||||| Sbjct 2021552 ACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCT--AAAGAATATGCCTTCAACA 2021495 Query 21608 GCAGCAAATGCAACTAATCGTTCACC---GTATGTAGATTCTTTATCCAATATCCATTTT 21664 || |||||||||| || |||||||| || || ||| |||| || ||||| Sbjct 2021494 GCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGA--CTTTGAAGAA-ATCCAAGCC 2021438 Query 21665 TCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGA 21724 ||||| | ||||| |||| | | || || ||||| || || || | || Sbjct 2021437 AGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGCATTGAACAAATAG 2021378 Query 21725 tttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGT 21784 | | ||| | | || | || ||||||||||| || || Sbjct 2021377 TCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAGTGC 2021318 Query 21785 ATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC- 21843 | |||||| || || || ||||| ||||| ||||| | ||||| | |||||| || Sbjct 2021317 ACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACTTCT 2021258 Query 21844 GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGC 21903 || | ||| |||| |||| ||||||||||| || ||||| |||||||||||| || Sbjct 2021257 TGACTGAAA-CGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGGC 2021199 Query 21904 CAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATC 21963 |||| | | ||||| || |||||| || || | | | |||||| |||||| Sbjct 2021198 TAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCGTGCCCAATCATCTAAATC 2021139 Query 21964 TTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 || ||||||||||| ||||| |||||||| Sbjct 2021138 CTTGGATAAATCTACCTCTTCCACGGTCCAAAA 2021106 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| |||||||||||||| | |||||||| ||| | | || | ||| ||| || Sbjct 2022069 TTTAGAAATCAGCATCTAACGTGAAAACATGATCCATTCTATTCGCAGTAACGCCCCATT 2022010 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 | || || |||| |||| | ||||| || ||||| || || || || ||||| ||| || Sbjct 2022009 TCTGGTATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCATCTAATGAGATAAGTT 2021950 Query 21246 CCATAAAA 21253 |||||||| Sbjct 2021949 CCATAAAA 2021942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531888792339440