Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq925 190 2e-43
>seq925
Length=3171676
Score = 190 bits (210), Expect = 2e-43
Identities = 459/693 (66%), Gaps = 12/693 (2%)
Strand=Plus/Minus
Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369
||| ||||| ||||| ||||| | |||| | |||||||||||| || | |||||
Sbjct 2021792 ATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAGGTTTAC 2021733
Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429
||| | || | ||| || || || ||| || || |||||| || || | ||
Sbjct 2021732 AGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGATTTCAAT 2021673
Query 21430 TATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACA 21489
|| | | || || | | || |||| ||||||||||| || ||||||||
Sbjct 2021672 AATACGTTCCCTGCTGGGTTTCTGTATCAAATGTTGGAACATCAAACACGCGAAATCACA 2021613
Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549
||| ||||| || || | || || ||||| || |||||||| || |||||||| ||
Sbjct 2021612 ATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCATTAAACC 2021553
Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCCTCAACG 21607
| || || | |||||| ||||| ||||| ||| || |||||| ||||| |||||
Sbjct 2021552 ACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCT--AAAGAATATGCCTTCAACA 2021495
Query 21608 GCAGCAAATGCAACTAATCGTTCACC---GTATGTAGATTCTTTATCCAATATCCATTTT 21664
|| |||||||||| || |||||||| || || ||| |||| || |||||
Sbjct 2021494 GCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGA--CTTTGAAGAA-ATCCAAGCC 2021438
Query 21665 TCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGA 21724
||||| | ||||| |||| | | || || ||||| || || || | ||
Sbjct 2021437 AGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGCATTGAACAAATAG 2021378
Query 21725 tttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGT 21784
| | ||| | | || | || ||||||||||| || ||
Sbjct 2021377 TCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAGTGC 2021318
Query 21785 ATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC- 21843
| |||||| || || || ||||| ||||| ||||| | ||||| | |||||| ||
Sbjct 2021317 ACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACTTCT 2021258
Query 21844 GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGC 21903
|| | ||| |||| |||| ||||||||||| || ||||| |||||||||||| ||
Sbjct 2021257 TGACTGAAA-CGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGGC 2021199
Query 21904 CAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATC 21963
|||| | | ||||| || |||||| || || | | | |||||| ||||||
Sbjct 2021198 TAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCGTGCCCAATCATCTAAATC 2021139
Query 21964 TTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996
|| ||||||||||| ||||| ||||||||
Sbjct 2021138 CTTGGATAAATCTACCTCTTCCACGGTCCAAAA 2021106
Score = 82.4 bits (90), Expect = 8e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||| |||||||||||||| | |||||||| ||| | | || | ||| ||| ||
Sbjct 2022069 TTTAGAAATCAGCATCTAACGTGAAAACATGATCCATTCTATTCGCAGTAACGCCCCATT 2022010
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
| || || |||| |||| | ||||| || ||||| || || || || ||||| ||| ||
Sbjct 2022009 TCTGGTATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCATCTAATGAGATAAGTT 2021950
Query 21246 CCATAAAA 21253
||||||||
Sbjct 2021949 CCATAAAA 2021942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531888792339440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |