Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1762 482 3e-131 seq925 259 6e-64 >seq1762 Length=809008 Score = 482 bits (534), Expect = 3e-131 Identities = 1243/1881 (66%), Gaps = 32/1881 (2%) Strand=Plus/Minus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 ||||| | |||||||| |||| | | || || || || || | ||| ||||| || Sbjct 695480 TTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCG 695421 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 ||||||| ||| |||| || |||||||| ||| || |||||| ||| | || Sbjct 695420 GTTTTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGGT 695361 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 ||||||| || ||||| | ||||||||||| ||||| ||||| || | || |||||| Sbjct 695360 TCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGCC 695301 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATC 62224 ||||||||| || ||| | ||| ||||||| |||||||| | | ||| || | Sbjct 695300 ATTTTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTA---TG 695244 Query 62225 TTCTGGAAGGTTTGTATTC-------TGAATGGATCCACCATCTGCCATAATCCTATTCT 62277 || ||| ||| | |||| || || || |||| | ||||| ||| | Sbjct 695243 TTTTGG--GGTATAGATTCAATGTTTTGTATTGAACCACGGCTAGTGATAATTTGATTTT 695186 Query 62278 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 62337 | || ||||||| |||||| || || | | | | | ||| | || || | Sbjct 695185 TCATATCATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAA 695126 Query 62338 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCG 62397 | ||||| || || || | || | ||||| |||||||| ||| ||||| || | | Sbjct 695125 CCTGAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAG 695066 Query 62398 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAAC 62457 | |||||||| |||| ||||| || ||||| || || ||||| ||||| | | |||| Sbjct 695065 ATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAG 695006 Query 62458 TATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62517 || | | ||| | | | | ||||| ||||| | ||||||||| || || | Sbjct 695005 AGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTCCATAGTTCAG 694946 Query 62518 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62577 ||| |||| |||||| || || | || ||| ||| Sbjct 694945 TCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTTCAT 694886 Query 62578 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62637 | || ||||| || || || ||||| | ||| || || || ||||| ||||| || | Sbjct 694885 AAGTTTCGTAAGGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCATAGT 694826 Query 62638 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 62697 |||| ||||| || || | | ||| | ||||| ||| || | ||||| Sbjct 694825 AAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTCGTAAGGATAGC 694766 Query 62698 TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62757 | ||| || || ||||| ||||| ||||| |||||||||||||| || | ||| || Sbjct 694765 GCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCCTGA 694706 Query 62758 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62817 |||||| | | ||||| || | ||||| | || ||||| || |||||||| | || Sbjct 694705 AATTAGATTTCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTAAAT 694646 Query 62818 TTCT-GACAATTACTTTGACCACATCCTTCAG---TTTGAGAAAATCAAATCGCCCATCT 62873 | | | || ||| | || ||||| || ||| |||||| || ||| Sbjct 694645 TCCGCGTCACGGTCTTAGTG-ACTTCCTTGAGGCGTTT---AAAATCGTATTTTTTGTCT 694590 Query 62874 ATT---ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 62930 | |||||||| || | ||||| ||||| | ||| || || |||||||| | || Sbjct 694589 GGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTACCTCGTCAGGT 694530 Query 62931 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGT 62990 | | ||| | | || || ||||| | |||||| || || || || || | ||| ||| Sbjct 694529 GCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATATTCTGT 694470 Query 62991 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63050 |||||||||||| | ||||| ||||||||||| | || | || || || || || | | Sbjct 694469 TGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTCTCCACC 694410 Query 63051 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG-ATTTGTATCTCCT 63109 || ||||||||||| | ||| | | | | || || | | | ||| | | |||| Sbjct 694409 TGCGATTCTATAATGGAAAACCAAAGGCTTTGGGCTTTAACTTTCTTATTAGCACGTCCT 694350 Query 63110 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169 | || ||| ||| ||| || || |||||| || || |||||||| | || ||||| Sbjct 694349 T-CTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAACTTCGTGTAATCC 694291 Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAA 63228 ||||| | || |||||||| || ||||| || | | | ||||| | || ||||||| Sbjct 694290 GGGACACTTATGTGGACACATTAATGACCAATCCTCATT-TGCTTCAACACGCTTCATAA 694232 Query 63229 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63288 | | ||||| ||||| | ||| ||||| |||||| | || ||| ||||| ||||| | Sbjct 694231 ATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTCGATGCTCCTCTTTTCCGG 694172 Query 63289 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63348 |||| || || | ||| | || | | |||||||| ||||| || ||||||||||| | Sbjct 694171 TATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGTATATAG 694112 Query 63349 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63408 | | | |||| || ||||| || || ||||| | || | || |||||| ||| Sbjct 694111 CAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTATTGAAAA 694052 Query 63409 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCAC 63468 | | ||||||||| | | || |||||| | ||||| || || | || | | || Sbjct 694051 CACGCAACATTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAATCGAAGTGCCTT 693992 Query 63469 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63528 | || || ||| | || || || || || || || |||||| || ||||| | Sbjct 693991 TAGCGCGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAATCAATGCAC 693932 Query 63529 ATCGTTTTAACG-TGTCATAGATACCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAA 63586 || | | | || ||| | | || || || ||| || |||| ||| ||||| |||||| Sbjct 693931 ATTGATGTGCCGATGT-AAATATGCCATCAATGGAGTCGTCGACCATAGTTAA-TAGAAA 693874 Query 63587 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63646 ||| ||| | ||| | | | || | ||| ||| | || || || || || || Sbjct 693873 ACATGAAGATAATTGTGGCTGTTTGGTAGCGGCAGCAAAGAGTGTTGGTGAGGCATGTGT 693814 Query 63647 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63706 ||| | ||| ||||| | |||||| || || || || | ||||||||| ||| Sbjct 693813 AAAGTAACGTTCTGAAAGCAAATTGTATGTGTCGATTGCCGCATCTATATCCTCACCATG 693754 Query 63707 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766 || || | || |||||||||||||| ||||| || | |||||| || || || | Sbjct 693753 TATACCAATGGCTACACGCATTAACATATGCTGTGGCCGTTCAACAATTTTACCATTCAA 693694 Query 63767 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63826 || | || ||||| ||| | ||| ||||| || ||||| || || || || || Sbjct 693693 CTTGAGTAAATAGGAACGTTCAAGAGTCTTAAACCCGAAATAATTATAACCGAAATCACG 693634 Query 63827 TTCGTAAATAATAACCGAGTT 63847 || |||||||| | ||||| Sbjct 693633 ATCATAAATAATTGCAGAGTT 693613 >seq925 Length=3171676 Score = 259 bits (286), Expect = 6e-64 Identities = 483/707 (68%), Gaps = 3/707 (0%) Strand=Plus/Minus Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 ||| | ||| || |||||||| ||||| ||| | ||||||||| || || || Sbjct 2021798 CAAACGATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAG 2021739 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 || || || | || | || | |||||||||||||| || || || | ||| || Sbjct 2021738 GTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGAT 2021679 Query 33252 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311 ||| ||| || ||| || | ||||||| ||||||||||| ||||| Sbjct 2021678 TTCAATAATACGTTCCCTGCTGGGTTTCTGTATCAAATGTTGGAACATCAAACACGCGAA 2021619 Query 33312 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371 ||| || || | ||||||||| | || | || ||||| || || | || ||||| Sbjct 2021618 ATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCAT 2021559 Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431 || ||||| || ||||||||||| || || || || || |||||| || ||||| Sbjct 2021558 TAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCTTC 2021499 Query 33432 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGTA-TCCACTT 33488 || || ||||| ||||| | | || ||| | || || | | | | |||| Sbjct 2021498 AACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAAGAAATCCAAGC 2021439 Query 33489 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 | |||||||| ||||| || ||| ||||||||| || || ||||| || | ||| Sbjct 2021438 CAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGCATTGAACAAATA 2021379 Query 33549 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33608 || | ||| || | || |||| ||| || || || || | ||||||||||| || || Sbjct 2021378 GTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAGTG 2021319 Query 33609 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 | ||||| || || || ||||| ||||||||||| | ||||| || | || ||||| Sbjct 2021318 CACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACTTC 2021259 Query 33669 TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728 | || || ||||| ||||||||||||| || || || || ||| |||||||| || Sbjct 2021258 TTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGGC 2021199 Query 33729 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 ||||| || | ||||| | |||||| || ||| |||||||| | ||| Sbjct 2021198 TAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCGTGCCCAATCATCTAAATC 2021139 Query 33789 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 || |||| |||||| |||||||| |||||||| || || ||||||| Sbjct 2021138 CTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCTTCTGCCT 2021092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622933136966960