Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 482 3e-131
seq925 259 6e-64
>seq1762
Length=809008
Score = 482 bits (534), Expect = 3e-131
Identities = 1243/1881 (66%), Gaps = 32/1881 (2%)
Strand=Plus/Minus
Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045
||||| | |||||||| |||| | | || || || || || | ||| ||||| ||
Sbjct 695480 TTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCG 695421
Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105
||||||| ||| |||| || |||||||| ||| || |||||| ||| | ||
Sbjct 695420 GTTTTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGGT 695361
Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165
||||||| || ||||| | ||||||||||| ||||| ||||| || | || ||||||
Sbjct 695360 TCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGCC 695301
Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATC 62224
||||||||| || ||| | ||| ||||||| |||||||| | | ||| || |
Sbjct 695300 ATTTTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTA---TG 695244
Query 62225 TTCTGGAAGGTTTGTATTC-------TGAATGGATCCACCATCTGCCATAATCCTATTCT 62277
|| ||| ||| | |||| || || || |||| | ||||| ||| |
Sbjct 695243 TTTTGG--GGTATAGATTCAATGTTTTGTATTGAACCACGGCTAGTGATAATTTGATTTT 695186
Query 62278 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 62337
| || ||||||| |||||| || || | | | | | ||| | || || |
Sbjct 695185 TCATATCATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAA 695126
Query 62338 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCG 62397
| ||||| || || || | || | ||||| |||||||| ||| ||||| || | |
Sbjct 695125 CCTGAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAG 695066
Query 62398 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAAC 62457
| |||||||| |||| ||||| || ||||| || || ||||| ||||| | | ||||
Sbjct 695065 ATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAG 695006
Query 62458 TATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62517
|| | | ||| | | | | ||||| ||||| | ||||||||| || || |
Sbjct 695005 AGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTCCATAGTTCAG 694946
Query 62518 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62577
||| |||| |||||| || || | || ||| |||
Sbjct 694945 TCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTTCAT 694886
Query 62578 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62637
| || ||||| || || || ||||| | ||| || || || ||||| ||||| || |
Sbjct 694885 AAGTTTCGTAAGGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCATAGT 694826
Query 62638 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 62697
|||| ||||| || || | | ||| | ||||| ||| || | |||||
Sbjct 694825 AAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTCGTAAGGATAGC 694766
Query 62698 TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62757
| ||| || || ||||| ||||| ||||| |||||||||||||| || | ||| ||
Sbjct 694765 GCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCCTGA 694706
Query 62758 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62817
|||||| | | ||||| || | ||||| | || ||||| || |||||||| | ||
Sbjct 694705 AATTAGATTTCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTAAAT 694646
Query 62818 TTCT-GACAATTACTTTGACCACATCCTTCAG---TTTGAGAAAATCAAATCGCCCATCT 62873
| | | || ||| | || ||||| || ||| |||||| || |||
Sbjct 694645 TCCGCGTCACGGTCTTAGTG-ACTTCCTTGAGGCGTTT---AAAATCGTATTTTTTGTCT 694590
Query 62874 ATT---ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 62930
| |||||||| || | ||||| ||||| | ||| || || |||||||| | ||
Sbjct 694589 GGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTACCTCGTCAGGT 694530
Query 62931 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGT 62990
| | ||| | | || || ||||| | |||||| || || || || || | ||| |||
Sbjct 694529 GCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATATTCTGT 694470
Query 62991 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63050
|||||||||||| | ||||| ||||||||||| | || | || || || || || | |
Sbjct 694469 TGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTCTCCACC 694410
Query 63051 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG-ATTTGTATCTCCT 63109
|| ||||||||||| | ||| | | | | || || | | | ||| | | ||||
Sbjct 694409 TGCGATTCTATAATGGAAAACCAAAGGCTTTGGGCTTTAACTTTCTTATTAGCACGTCCT 694350
Query 63110 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169
| || ||| ||| ||| || || |||||| || || |||||||| | || |||||
Sbjct 694349 T-CTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAACTTCGTGTAATCC 694291
Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAA 63228
||||| | || |||||||| || ||||| || | | | ||||| | || |||||||
Sbjct 694290 GGGACACTTATGTGGACACATTAATGACCAATCCTCATT-TGCTTCAACACGCTTCATAA 694232
Query 63229 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63288
| | ||||| ||||| | ||| ||||| |||||| | || ||| ||||| ||||| |
Sbjct 694231 ATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTCGATGCTCCTCTTTTCCGG 694172
Query 63289 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63348
|||| || || | ||| | || | | |||||||| ||||| || ||||||||||| |
Sbjct 694171 TATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGTATATAG 694112
Query 63349 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63408
| | | |||| || ||||| || || ||||| | || | || |||||| |||
Sbjct 694111 CAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTATTGAAAA 694052
Query 63409 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCAC 63468
| | ||||||||| | | || |||||| | ||||| || || | || | | ||
Sbjct 694051 CACGCAACATTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAATCGAAGTGCCTT 693992
Query 63469 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63528
| || || ||| | || || || || || || || |||||| || ||||| |
Sbjct 693991 TAGCGCGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAATCAATGCAC 693932
Query 63529 ATCGTTTTAACG-TGTCATAGATACCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAA 63586
|| | | | || ||| | | || || || ||| || |||| ||| ||||| ||||||
Sbjct 693931 ATTGATGTGCCGATGT-AAATATGCCATCAATGGAGTCGTCGACCATAGTTAA-TAGAAA 693874
Query 63587 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63646
||| ||| | ||| | | | || | ||| ||| | || || || || || ||
Sbjct 693873 ACATGAAGATAATTGTGGCTGTTTGGTAGCGGCAGCAAAGAGTGTTGGTGAGGCATGTGT 693814
Query 63647 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63706
||| | ||| ||||| | |||||| || || || || | ||||||||| |||
Sbjct 693813 AAAGTAACGTTCTGAAAGCAAATTGTATGTGTCGATTGCCGCATCTATATCCTCACCATG 693754
Query 63707 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766
|| || | || |||||||||||||| ||||| || | |||||| || || || |
Sbjct 693753 TATACCAATGGCTACACGCATTAACATATGCTGTGGCCGTTCAACAATTTTACCATTCAA 693694
Query 63767 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63826
|| | || ||||| ||| | ||| ||||| || ||||| || || || || ||
Sbjct 693693 CTTGAGTAAATAGGAACGTTCAAGAGTCTTAAACCCGAAATAATTATAACCGAAATCACG 693634
Query 63827 TTCGTAAATAATAACCGAGTT 63847
|| |||||||| | |||||
Sbjct 693633 ATCATAAATAATTGCAGAGTT 693613
>seq925
Length=3171676
Score = 259 bits (286), Expect = 6e-64
Identities = 483/707 (68%), Gaps = 3/707 (0%)
Strand=Plus/Minus
Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191
||| | ||| || |||||||| ||||| ||| | ||||||||| || || ||
Sbjct 2021798 CAAACGATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAG 2021739
Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251
|| || || | || | || | |||||||||||||| || || || | ||| ||
Sbjct 2021738 GTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGAT 2021679
Query 33252 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311
||| ||| || ||| || | ||||||| ||||||||||| |||||
Sbjct 2021678 TTCAATAATACGTTCCCTGCTGGGTTTCTGTATCAAATGTTGGAACATCAAACACGCGAA 2021619
Query 33312 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371
||| || || | ||||||||| | || | || ||||| || || | || |||||
Sbjct 2021618 ATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCAT 2021559
Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431
|| ||||| || ||||||||||| || || || || || |||||| || |||||
Sbjct 2021558 TAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCTTC 2021499
Query 33432 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGTA-TCCACTT 33488
|| || ||||| ||||| | | || ||| | || || | | | | ||||
Sbjct 2021498 AACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAAGAAATCCAAGC 2021439
Query 33489 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548
| |||||||| ||||| || ||| ||||||||| || || ||||| || | |||
Sbjct 2021438 CAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGCATTGAACAAATA 2021379
Query 33549 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33608
|| | ||| || | || |||| ||| || || || || | ||||||||||| || ||
Sbjct 2021378 GTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAGTG 2021319
Query 33609 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668
| ||||| || || || ||||| ||||||||||| | ||||| || | || |||||
Sbjct 2021318 CACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACTTC 2021259
Query 33669 TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728
| || || ||||| ||||||||||||| || || || || ||| |||||||| ||
Sbjct 2021258 TTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGGC 2021199
Query 33729 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788
||||| || | ||||| | |||||| || ||| |||||||| | |||
Sbjct 2021198 TAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCGTGCCCAATCATCTAAATC 2021139
Query 33789 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835
|| |||| |||||| |||||||| |||||||| || || |||||||
Sbjct 2021138 CTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCTTCTGCCT 2021092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622933136966960
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