Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1762 107 2e-18 seq1509 105 6e-18 seq145 102 8e-17 seq1310 93.3 4e-14 >seq1762 Length=809008 Score = 107 bits (118), Expect = 2e-18 Identities = 670/1058 (63%), Gaps = 47/1058 (4%) Strand=Plus/Minus Query 147511 ACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAAG 147570 ||||||| || || || || ||||| | || ||||| || | || || |||||| | Sbjct 695077 ACGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTG 695018 Query 147571 CAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCCCAGT 147630 ||| | ||| || ||||||| || || | |||| | || | ||| ||| | Sbjct 695017 CAAGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAAT 694958 Query 147631 TCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAACTTG 147690 |||| || ||| ||| | || ||| ||||| |||| ||||||||| || || Sbjct 694957 TCCATAGTTCAGTCG---GCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAA 694901 Query 147691 CAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGAC 147750 | || || || |||| ||||| | || || ||| | |||| || | | Sbjct 694900 CCGGTGAACCTTCATAAGTTTCGTAAGGCCCAAATTTTTCAGCCAATTCGCAGCT--GGC 694843 Query 147751 TT--AGTGCACCATAATAAATAGTTTCTGAAATCTTT-TTATTTAAATCTCTA-GCCTCT 147806 || | |||||||| ||||| ||||| |||| ||| || || ||| | || | | Sbjct 694842 TTCTAAAGCACCATAGTAAATTGTTTC--AAATATTTGTTGATTCAATAGGAATGCTTGT 694785 Query 147807 TGGCTGTCGTAGGGCATATC-CAAAATGGCGAACGTATCCGCAAGTCCTTGAATACCGAT 147865 | ||| ||||| || ||| | || | | || | || || | ||||| | ||| || Sbjct 694784 TCGCTTTCGTAAGG-ATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAAT 694726 Query 147866 ACCGATGGGTCGGTGTCTGAAATTCGATG-CTTGAGCGCTAGCCAACGGATAAAAATTCA 147924 |||||| || || || |||||||| ||| |||| || || ||| ||||| || | Sbjct 694725 ACCGATCGGACGATGCCTGAAATTAGATTTCTTG-GCTTCAGGCAATGGATAGTGGTTTA 694667 Query 147925 AGTCGATAATTTTATTGAGATTATTGGTAACCACTCTAGATACATTGTAGAGCGACTTAA 147984 || || |||||||| | ||| || || ||| || | | ||| |||| Sbjct 694666 TATCAATGATTTTATTTAAATTCCGCGTCACGGTCTTAGTGACTTCCTTGAGGCGTTTAA 694607 Query 147985 AGTCGAAGCTTTTAAACTGTTTATTGGCAAAATTATTTACGGCAATCGAGGCCAAGTTAC 148044 | ||| | |||| || || |||| |||| | ||||||||| || || || | Sbjct 694606 AATCGTATTTTTTGTCTGGTGTAA---CAAACATATTGAGGGCAATCGATGCTAAATTGC 694550 Query 148045 ACACGGCCGTTTCTCGATTGTCGCT--ATATTGAACGATTTCGGCACACAGATTGCTGTT 148102 | || || | |||| | ||| ||| | ||| ||||| | || | ||| ||| Sbjct 694549 ATACAGC--TACCTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCA 694492 Query 148103 TCGAATCACTCCCTCGtttttttGATTATTTTTATTGTTAACGTGATCTTTAAACATCAT 148162 | ||| || || | ||||||| | || | ||| ||| ||| | | ||| Sbjct 694491 TTTAATTGTGCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACAT 694432 Query 148163 GTATGGAGCTCCGGTCTCGACTTGAGTCTCAATAATTTTTCTATGAAGATCTAAAGCCG- 148221 || || | || ||||| || || | || ||||| ||| | | || || Sbjct 694431 ATACGGTGTGCCCGTCTCCACCTGCGATTCTATAATG-------GAAAACCAAAGGCTTT 694379 Query 148222 -------AAATTTGTTTTTTAAACTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCG 148274 || ||| || || || | ||||| || || ||| ||| | | ||| Sbjct 694378 GGGCTTTAACTTTCTTATTAGCACGT-CCTTCTTGTTCATATTTTGTGTATAACTTTTCG 694320 Query 148275 AATTCTTGGCCATAGCAATCGTTTAAACCGGGACACTCGTCGGGGCACATCAATGACCAT 148334 ||||||| || | |||| ||| |||||||||| | || ||||| |||||||| Sbjct 694319 AATTCTTCACCCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCAA 694260 Query 148335 TTCCCTCCTGTCTTT--ACCCTCTTCATAAACAGATCAGGTGTCCACATGGCAAAAAGAA 148392 | |||| | | || || | ||||||||| | |||||| |||||| ||| ||| | Sbjct 694259 T--CCTCATTTGCTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATA 694202 Query 148393 GATCGCGAGCCTTCATA-TCCTCGGCACCCATATTGCGCTTTAGATCCaaaaaagtaaaa 148451 ||| | ||| | || ||||| || |||| ||||| ||||||||| |||| Sbjct 694201 AATCTCTAGC-TCGATGCTCCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAA 694143 Query 148452 aCGTCTGCGTGCCAAGGCTCGATGTATACGGTCATGGCGCCTTTCCTTTTA---CCTCCT 148508 | || |||||||||||||| | ||||| | | || ||| | |||| || ||| Sbjct 694142 ATATCAGCGTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCT 694083 Query 148509 TGATCGACATGGCGTAGCATGCTATTAAAAACACGCAA 148546 ||||| |||| ||| | | |||| ||||||||||| Sbjct 694082 TGATCCACATAACGTGCTACGTTATTGAAAACACGCAA 694045 >seq1509 Length=4395057 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 71655 AATTCGAGCATAATCAAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCA 71714 |||||||||| ||| || || || || || |||||||| | ||| ||| || Sbjct 619092 AATTCGAGCAAGCTCACACACACGACGATCTTTGGAATGCATCGCAGTTGCAGTTAGTAC 619151 Query 71715 ATGAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGA 71774 ||| || ||||| || |||| || || ||||| ||||||||||| || ||||| ||| Sbjct 619152 GTGAAGGCAAAATGCATGGATTTCTGCGAATGTATTGGGCCAAAAAAATACTCGAATGGT 619211 Query 71775 CTCAAACTCCCGAGCAGGCGCTCG-AGTATTCTATTTATCTAAACGATAGATACAGTCTC 71833 || || || || |||| || | |||| ||||| | ||||||||| || ||| | Sbjct 619212 CTTCTACGCCAGAAGAGGCACTGGAAGTA-GCTATTCTTTTAAACGATAAGTATAGTTTG 619270 Query 71834 GACGGTCGCGATCCTAACGGTTATGTCGGT 71863 |||||||| ||||| || || ||||| ||| Sbjct 619271 GACGGTCGAGATCCAAATGGATATGTTGGT 619300 >seq145 Length=1338480 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || ||||| | || || || | ||||| | || | ||| | Sbjct 899038 AATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCTC 898979 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || |||||||| || || ||| ||| || |||||||| || || |||||||| Sbjct 898978 GGATACTATCGAGCATGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCCCCCGATCA 898919 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 |||| | | |||| || || |||||||| ||||||| | | || | ||| ||||||| Sbjct 898918 ACAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCG-TACTTTAGCTGACTATA 898860 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 | || ||||| || ||||| | || | || ||| | |||||||| ||| Sbjct 898859 ATATCCAAAAGGAGTCTACCTTACACTTAGTGCTGCGTCTTAGAGGTGGA 898810 >seq1310 Length=3030561 Score = 93.3 bits (102), Expect = 4e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 26757 TAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAA 26816 ||| | ||||||||||| | ||||| |||||| | ||||| || | ||||| | || Sbjct 644969 TAGACGAACAAAATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAG 645028 Query 26817 TTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATA 26876 | || || ||||||||||| | |||||| || || ||||||||||| || Sbjct 645029 GTCGAGCCATCTGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATC 645088 Query 26877 CCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 26925 || || ||||||||| | | || | || |||||||||| | ||||||| Sbjct 645089 CCACCAGATCAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATG 645137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478651594196320